Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OQH79_RS14260 Genome accession   NZ_AP025227
Coordinates   3130393..3131754 (-) Length   453 a.a.
NCBI ID   WP_124040548.1    Uniprot ID   -
Organism   Clostridium perfringens E strain CP118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3125393..3136754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQH79_RS14240 (CP118TE_27700) ispD 3126765..3127442 (-) 678 WP_124045112.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OQH79_RS14245 (CP118TE_27710) - 3127456..3128562 (-) 1107 WP_061429245.1 PIN/TRAM domain-containing protein -
  OQH79_RS14250 (CP118TE_27720) - 3128874..3129275 (+) 402 WP_003459340.1 hypothetical protein -
  OQH79_RS14255 (CP118TE_27730) disA 3129309..3130373 (-) 1065 WP_003452233.1 DNA integrity scanning diadenylate cyclase DisA -
  OQH79_RS14260 (CP118TE_27740) radA 3130393..3131754 (-) 1362 WP_124040548.1 DNA repair protein RadA Machinery gene
  OQH79_RS14265 (CP118TE_27750) nagB 3132005..3132733 (-) 729 WP_061429246.1 glucosamine-6-phosphate deaminase -
  OQH79_RS14270 (CP118TE_27760) - 3132730..3133452 (-) 723 WP_061429247.1 GntR family transcriptional regulator -
  OQH79_RS14275 (CP118TE_27770) - 3133652..3133816 (+) 165 WP_003459343.1 hypothetical protein -
  OQH79_RS14280 (CP118TE_27780) - 3133910..3134137 (+) 228 WP_003452255.1 glutaredoxin family protein -
  OQH79_RS14285 (CP118TE_27790) - 3134261..3135709 (-) 1449 WP_003459369.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  OQH79_RS14290 (CP118TE_27800) - 3135726..3135959 (-) 234 WP_003452243.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49820.50 Da        Isoelectric Point: 6.0614

>NTDB_id=90622 OQH79_RS14260 WP_124040548.1 3130393..3131754(-) (radA) [Clostridium perfringens E strain CP118]
MAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIKEIKSGEKERYDTGIGELNRV
LGGGLVKGSLTLISGDPGIGKSTLLLQTANNISQKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETNLDVIEAYI
DKLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVDTVLSFEGE
RTEEFRILRTMKNRFGTTAEIGVFEMRGEGLMQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLASETKAVMP
RRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAASLEKLVVVGEVGLTGE
IRPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=90622 OQH79_RS14260 WP_124040548.1 3130393..3131754(-) (radA) [Clostridium perfringens E strain CP118]
GTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAAATGGATGGGAAAATGTCCAGAATG
TAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATACTAAGAGTAATCAATCTTCTCCTAAGGTTGAAAGACAAATTG
GTGAGCTTAAAAAGATAAAAGAAATTAAGTCAGGTGAAAAGGAAAGATATGATACTGGAATTGGTGAATTAAATAGAGTA
TTAGGTGGAGGACTTGTTAAGGGGTCACTTACACTTATATCTGGTGATCCTGGGATAGGTAAATCTACACTTCTTTTACA
GACAGCCAATAATATTTCACAAAAATATGGGAAAGTTTTATATGTTTCTGGGGAAGAATCAGAAGAACAAATAAAAATAA
GAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAATCTTGATGTAATAGAAGCATATATA
GATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGAAACAGTTTCTTCAGCACCAGGAAG
TGTTTCACAGGTTAAGGAATGCTCAAATGCTGTAATGAGAATTGCTAAAGGAAAAAATATTCCTTTATTTATAGTTGCTC
ACGTTACTAAGCAAGGGGATTTAGCAGGACCAAGAGTATTAGAACACATGGTGGATACTGTATTATCCTTTGAAGGGGAA
AGAACTGAAGAATTTAGAATATTAAGAACCATGAAAAATAGATTTGGTACTACGGCTGAAATAGGTGTTTTTGAAATGCG
TGGAGAGGGATTAATGCAGGTTTATGATCCATCTAGCATGTTTTTAGAGGACACTAGTTTTAATCAAGAAGGGTCAGTTG
TAATTGGAGTCATGGAAGGAACTAGACCTATTCTTGTGGAAATACAATCATTAGCATCTGAAACAAAAGCAGTTATGCCT
AGAAGAACCTCTGTAGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATTAGAAAAAAAATTAAGAGTTCCTTT
TTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTACAGCAGACTTAGGAATTGCTATTT
CACTTGTATCCTCTGTTAAAGGTAAAGCAGCTAGCTTAGAAAAATTAGTTGTTGTAGGCGAGGTTGGGTTAACAGGTGAA
ATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATTTTTAAATGCAGTTGTTCCTTATAG
AAGTTTAGAAAAATTAAAGGGAAGTAAATTAAACCTTATAGGAGTAAAAACTGTAAGGGAAGCAATAGGAAAGATATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

100

0.501
  radA Streptococcus pneumoniae Rx1

47.797

100

0.479
  radA Streptococcus pneumoniae D39

47.797

100

0.479
  radA Streptococcus pneumoniae R6

47.797

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.797

100

0.479
  radA Streptococcus mitis SK321

47.577

100

0.477
  radA Streptococcus mitis NCTC 12261

47.577

100

0.477

Multiple sequence alignment