Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   SIB90_RS11790 Genome accession   NZ_CP138946
Coordinates   2406892..2407023 (+) Length   43 a.a.
NCBI ID   WP_328585567.1    Uniprot ID   -
Organism   Prochlorococcus sp. MIT 1227     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2401892..2412023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB90_RS11770 - 2402036..2402272 (-) 237 WP_063418795.1 hypothetical protein -
  SIB90_RS11775 - 2402297..2402605 (-) 309 WP_063418794.1 hypothetical protein -
  SIB90_RS11780 - 2403253..2406297 (+) 3045 WP_413351809.1 tetratricopeptide repeat protein -
  SIB90_RS11785 - 2406420..2406638 (+) 219 WP_063418829.1 hypothetical protein -
  SIB90_RS11790 comA 2406892..2407023 (+) 132 WP_328585567.1 phospholipase D-like domain-containing protein Machinery gene
  SIB90_RS11795 - 2407105..2407821 (-) 717 WP_074160115.1 hypothetical protein -
  SIB90_RS11800 - 2407802..2408500 (-) 699 WP_063418831.1 DUF3854 domain-containing protein -
  SIB90_RS11805 - 2408503..2408634 (-) 132 WP_255454336.1 hypothetical protein -
  SIB90_RS11810 - 2408832..2409113 (-) 282 WP_205909631.1 hypothetical protein -
  SIB90_RS11820 lexA 2409606..2410229 (-) 624 WP_011129759.1 transcriptional repressor LexA -
  SIB90_RS11825 argF 2410365..2411321 (-) 957 WP_063418833.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 43 a.a.        Molecular weight: 4930.56 Da        Isoelectric Point: 6.8753

>NTDB_id=906136 SIB90_RS11790 WP_328585567.1 2406892..2407023(+) (comA) [Prochlorococcus sp. MIT 1227]
MITGSFNWSPAAAHTNDETLVVIHSPLLHNHFTREMDRLWRGA

Nucleotide


Download         Length: 132 bp        

>NTDB_id=906136 SIB90_RS11790 WP_328585567.1 2406892..2407023(+) (comA) [Prochlorococcus sp. MIT 1227]
GTGATCACAGGTTCATTTAATTGGAGCCCTGCTGCAGCTCACACCAACGATGAAACACTGGTGGTGATTCATTCACCACT
GCTCCACAATCACTTCACCCGCGAAATGGATCGATTGTGGCGTGGTGCTTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(1-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

55

93.023

0.512