Detailed information NTG0906133

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABL390_RS12200
• Genome accession: NZ_CP157581
• Coordinates: 2670402..2671406 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NPA09B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2665402..2676406

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL390_RS12185 (ABL390_12185)	-	2665886..2666893 (+)	1008	WP_003098486.1	TolB family protein	-
ABL390_RS12190 (ABL390_12190)	mutS	2667019..2669586 (+)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
ABL390_RS12195 (ABL390_12195)	fdxA	2669653..2669976 (+)	324	WP_003092272.1	ferredoxin FdxA	-
ABL390_RS12200 (ABL390_12200)	rpoS	2670402..2671406 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ABL390_RS12205 (ABL390_12205)	-	2671511..2672404 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
ABL390_RS12210 (ABL390_12210)	-	2672450..2673085 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ABL390_RS12215 (ABL390_12215)	surE	2673118..2673867 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ABL390_RS12220 (ABL390_12220)	truD	2673855..2674922 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
ABL390_RS12225 (ABL390_12225)	ispF	2674919..2675392 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABL390_RS12230 (ABL390_12230)	fghA	2675463..2676314 (-)	852	WP_003122149.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=906133 ABL390_RS12200 WP_003113871.1 2670402..2671406(-) (rpoS) [Pseudomonas aeruginosa strain NPA09B]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=906133 ABL390_RS12200 WP_003113871.1 2670402..2671406(-) (rpoS) [Pseudomonas aeruginosa strain NPA09B]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653