Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   SIC09_RS11550 Genome accession   NZ_CP138944
Coordinates   2410595..2410726 (+) Length   43 a.a.
NCBI ID   WP_328585567.1    Uniprot ID   -
Organism   Prochlorococcus sp. MIT 1312     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2405595..2415726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC09_RS11535 - 2405739..2405975 (-) 237 WP_063418795.1 hypothetical protein -
  SIC09_RS11540 - 2406956..2410000 (+) 3045 WP_413351809.1 tetratricopeptide repeat protein -
  SIC09_RS11545 - 2410123..2410341 (+) 219 WP_063418829.1 hypothetical protein -
  SIC09_RS11550 comA 2410595..2410726 (+) 132 WP_328585567.1 phospholipase D-like domain-containing protein Machinery gene
  SIC09_RS11555 - 2410808..2411524 (-) 717 WP_074160115.1 hypothetical protein -
  SIC09_RS11560 - 2411505..2412203 (-) 699 WP_063418831.1 DUF3854 domain-containing protein -
  SIC09_RS11565 - 2412535..2412816 (-) 282 WP_169189970.1 hypothetical protein -
  SIC09_RS11575 lexA 2413309..2413932 (-) 624 WP_011129759.1 transcriptional repressor LexA -
  SIC09_RS11580 argF 2414068..2415024 (-) 957 WP_063418833.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 43 a.a.        Molecular weight: 4930.56 Da        Isoelectric Point: 6.8753

>NTDB_id=906116 SIC09_RS11550 WP_328585567.1 2410595..2410726(+) (comA) [Prochlorococcus sp. MIT 1312]
MITGSFNWSPAAAHTNDETLVVIHSPLLHNHFTREMDRLWRGA

Nucleotide


Download         Length: 132 bp        

>NTDB_id=906116 SIC09_RS11550 WP_328585567.1 2410595..2410726(+) (comA) [Prochlorococcus sp. MIT 1312]
GTGATCACAGGTTCATTTAATTGGAGCCCTGCTGCAGCTCACACCAACGATGAAACACTGGTGGTGATTCATTCACCACT
GCTCCACAATCACTTCACCCGCGAAATGGATCGATTGTGGCGTGGTGCTTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(1-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

55

93.023

0.512