Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ABLU27_RS06120 Genome accession   NZ_CP157500
Coordinates   1125013..1125729 (-) Length   238 a.a.
NCBI ID   WP_406835336.1    Uniprot ID   -
Organism   Lactococcus lactis strain 2B-9     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1120013..1130729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU27_RS06105 (ABLU27_06105) cdaA 1121706..1122584 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  ABLU27_RS06110 (ABLU27_06110) - 1122574..1123533 (+) 960 WP_012897245.1 YbbR-like domain-containing protein -
  ABLU27_RS06115 (ABLU27_06115) glmM 1123579..1124937 (+) 1359 WP_003131539.1 phosphoglucosamine mutase -
  ABLU27_RS06120 (ABLU27_06120) treR 1125013..1125729 (-) 717 WP_406835336.1 trehalose operon repressor Regulator
  ABLU27_RS06125 (ABLU27_06125) - 1125840..1126325 (+) 486 WP_015425865.1 PTS glucose transporter subunit IIA -
  ABLU27_RS06130 (ABLU27_06130) - 1126462..1128027 (+) 1566 WP_025016545.1 PTS transporter subunit EIIC -
  ABLU27_RS06135 (ABLU27_06135) - 1128095..1130404 (+) 2310 WP_406835339.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27879.54 Da        Isoelectric Point: 6.4172

>NTDB_id=906069 ABLU27_RS06120 WP_406835336.1 1125013..1125729(-) (treR) [Lactococcus lactis strain 2B-9]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEETLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=906069 ABLU27_RS06120 WP_406835336.1 1125013..1125729(-) (treR) [Lactococcus lactis strain 2B-9]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGCTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGATTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGTGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGAAACTCTAGGGCTTGATATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAAATATCTTGACTTAAATCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTTGACCGCTTTCGTTTCACAGAATTTGCCAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462