Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   ABLU27_RS03965 Genome accession   NZ_CP157500
Coordinates   697936..701547 (+) Length   1203 a.a.
NCBI ID   WP_406835028.1    Uniprot ID   -
Organism   Lactococcus lactis strain 2B-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 692936..706547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU27_RS03955 (ABLU27_03955) dnaN 693396..694538 (+) 1143 WP_003130856.1 DNA polymerase III subunit beta -
  ABLU27_RS03960 (ABLU27_03960) rexB 694644..697943 (+) 3300 Protein_667 ATP-dependent nuclease subunit B -
  ABLU27_RS03965 (ABLU27_03965) rexA 697936..701547 (+) 3612 WP_406835028.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ABLU27_RS03970 (ABLU27_03970) - 701584..701784 (+) 201 WP_003132155.1 DUF951 domain-containing protein -
  ABLU27_RS03975 (ABLU27_03975) - 701794..702351 (-) 558 WP_010905025.1 helix-turn-helix domain-containing protein -
  ABLU27_RS03980 (ABLU27_03980) ychF 702633..703748 (+) 1116 WP_010905026.1 redox-regulated ATPase YchF -
  ABLU27_RS03985 (ABLU27_03985) - 703860..704183 (+) 324 WP_010905027.1 helix-turn-helix domain-containing protein -
  ABLU27_RS03990 (ABLU27_03990) - 704438..704782 (+) 345 WP_012896907.1 hypothetical protein -

Sequence

Protein


Download         Length: 1203 a.a.        Molecular weight: 138704.79 Da        Isoelectric Point: 4.9665

>NTDB_id=906053 ABLU27_RS03965 WP_406835028.1 697936..701547(+) (rexA) [Lactococcus lactis strain 2B-9]
MSEVKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDQLFISTFTKKAASELRMRLERDLKKARQES
SDENQARRLTLALQNLSNADIGTMDSFTQKLTKTNFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSGDDGLNISK
EKFEELIKNFSKDRNIAGFQKVVYTIYRFASATENPIKWLENQFLKGFETYKSLIDLSADFSADIKENLLIFFELLETSL
TNGVVAKKGAGRDKANLILDNKNELLEAITTKDFATFTELFLSIDTDIRVGSSKDEILSALKKDFSVQKQDLVGSKSKPG
EIRKFVDKIKHGQLIEKYQNQAFEIAENLQKFVIEFYQSYLERKKNENAFEYSDIAHFAIEILEENPDIRETLREHYDEI
MIDEYQDTSHTQERMLELLSNGHNLFMVGDIKQSIYGFRLADPGLFLEKYKDYAKTENPNQLIRLKENFRSRGEVLTFTN
DIFKHLMDEKLGEMTYGKEEALVQGNITDYPVESEKDFYPELLLYKENTSDEETDESEVRISDGEIKGAAQEIKKLIEAG
VEPKDIAILVRSKSNNNKIEDILLSYDIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDEL
TRISTQGSHDLRFWDKILLSLNKEGQNPELINPSLENKLKAFYKKFTEWRKLVNQVAIHDLLWKIYTETYYFDYVGALKN
GEMRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLASVNIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRF
NDRDLKEDVILSRENGLGMKLIADLKDEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLV
GKIKETDKKSGLDLYDNASLEGKILEDKFRNSSRGFQHWILALQNATKLPIKLNVYTKEELEAEKLEFTSQPDFKKLVEE
SEKFDNIMAHSDEIQKAQKIMNYEYPHQAATELSSIQTPSQVKKRSYEKQLQVGEIQPKSEFTRVKKLDFSDFGPKKVTA
AEIGSATHSFMQYADFSQADLFSFQATLDEMGFDEKIKNQIDIAKILTLFDTDFGQFLSENVDKTVKEAPFSMLRTDEFA
KEQYIVRGICDGFVKLTDKIVLFDYKTDRFTSSSAISEIKERYRDQMNLYSEALKKAYDVNQVDKYLILLGGPQQVFVEK
LDD

Nucleotide


Download         Length: 3612 bp        

>NTDB_id=906053 ABLU27_RS03965 WP_406835028.1 697936..701547(+) (rexA) [Lactococcus lactis strain 2B-9]
ATGAGTGAAGTAAAATTAACTCCAGAGCAAAATGAAGCCATTCATAGTTCTGGTAAGAATATTCTAGTTTCAGCGAGTGC
TGGTTCCGGAAAAACTTTTGTTATGGCTCAAAGAATTGTTGAGAAAGTCAAACAAGGAATTGAAATTGATCAACTTTTCA
TTTCCACATTTACAAAAAAAGCAGCAAGCGAATTACGGATGCGGCTTGAGCGAGATTTAAAAAAAGCCAGACAAGAAAGT
TCTGATGAAAATCAAGCTCGTAGGTTGACACTTGCTTTACAGAACCTGTCAAATGCTGATATTGGAACTATGGATAGTTT
CACCCAAAAATTGACAAAAACGAATTTCAATCGAGTAAATATTGACCCGAATTTCCGAATCTTAGCTGATCAAACAGAGA
GTGATTTAATTAGACAAGAAGTCTTTGAACAATTGGTTGAGTCTTATCTATCAGGAGATGATGGATTGAATATTTCAAAA
GAAAAATTTGAAGAACTTATAAAAAATTTTTCTAAAGACAGAAATATTGCTGGTTTTCAAAAAGTAGTTTACACTATTTA
CCGTTTTGCGTCAGCAACTGAAAATCCAATAAAGTGGTTAGAAAATCAATTTTTAAAAGGTTTTGAAACATATAAATCAC
TGATAGACTTGTCAGCAGATTTTTCAGCAGATATAAAAGAGAATTTACTGATATTTTTTGAACTTCTAGAAACTTCATTA
ACCAATGGAGTAGTTGCTAAAAAAGGGGCTGGACGTGATAAGGCCAATCTTATTTTAGATAATAAAAATGAACTCTTAGA
AGCAATAACCACTAAAGATTTTGCAACTTTCACAGAACTATTTTTATCAATAGATACAGATATTCGAGTGGGTTCTTCAA
AAGATGAAATACTTTCGGCTCTGAAAAAAGATTTTTCAGTACAAAAACAAGACTTAGTGGGCTCGAAATCCAAACCTGGA
GAAATTCGGAAGTTTGTTGATAAAATAAAACATGGTCAGTTGATTGAAAAATATCAAAATCAAGCATTTGAAATCGCAGA
AAACTTACAAAAATTTGTTATTGAGTTTTACCAAAGTTATTTAGAACGTAAAAAGAATGAAAATGCCTTTGAGTACTCTG
ATATCGCACACTTTGCCATCGAAATTTTAGAGGAAAATCCAGATATACGTGAAACTTTAAGAGAACATTATGATGAAATC
ATGATTGATGAGTATCAGGATACCAGCCACACTCAGGAGCGAATGCTGGAGCTTTTATCGAATGGACATAATCTCTTCAT
GGTTGGTGATATTAAGCAATCAATTTATGGCTTTCGTTTAGCTGACCCTGGCCTCTTTTTAGAAAAATATAAAGACTATG
CCAAGACAGAAAATCCAAATCAATTAATTCGCTTAAAAGAAAACTTTCGTTCACGTGGTGAGGTTTTAACATTTACAAAT
GATATCTTTAAACACCTGATGGATGAAAAATTAGGTGAGATGACTTATGGCAAAGAAGAAGCCTTAGTTCAAGGAAATAT
TACTGATTATCCAGTTGAATCTGAGAAAGATTTTTATCCAGAACTTCTTTTATACAAAGAAAATACAAGTGATGAAGAAA
CAGATGAATCCGAAGTAAGAATTTCGGATGGAGAGATTAAAGGAGCAGCTCAAGAAATAAAAAAATTGATTGAAGCTGGA
GTTGAACCAAAAGATATAGCAATCTTGGTTCGTTCTAAATCAAATAATAATAAAATTGAGGATATTCTGCTTAGTTACGA
TATTCCGGTCGTTCTTGATGAAGGACGAGTTGATTTTTTGAAATCAATGGAAGTCTTAATTATGTTAGATGTTTTACGAG
CAATTGATAATCCACTCTATGATTTATCATTGGTTGCGATGTTAAGGTCTCCGTTATTTGGATTTAATGAAGATGAATTA
ACTAGAATCAGTACTCAAGGAAGCCATGACCTTCGATTTTGGGATAAAATTCTTTTGTCACTTAATAAAGAAGGACAAAA
TCCAGAACTTATCAATCCTTCCTTAGAGAACAAGCTTAAAGCATTTTATAAGAAGTTTACAGAATGGCGTAAACTTGTAA
ACCAAGTTGCAATTCATGATTTACTTTGGAAAATATATACTGAAACCTACTATTTCGACTATGTTGGTGCCTTAAAAAAT
GGTGAAATGCGTCAAGCGAACTTACAAGCCTTAGCAGTTCGAGCAGAATCATATGAAAGTTCTGGTTATAAAGGATTATT
TAAATTTGTAAGATTAATCAACAAATTTATGGAACAAAATAATGATTTAGCTTCTGTTAATATAAAACTTCCTCAAAATG
CTGTTCGAGTGATGACCTTCCATAAATCAAAAGGATTAGAATTTGATTATGTCTTTTTAATGAATTTACAATCTCGTTTC
AACGATCGTGATTTGAAAGAAGATGTTATCCTAAGTCGTGAAAATGGTTTAGGAATGAAGCTTATTGCCGATTTAAAGGA
TGAAGCAGATGTTATAACTGATTTCCCTTATGCTTTAGTGAAAATGGAAACATTCCCTTACATGGTGAATAAAGACTTAA
AACAAAGAGCAGCTCTTTCAGAAGAAATGCGTGTTTTATATGTTGCATTTACACGAGCAAAGAAAAAACTTTATCTTGTC
GGAAAAATAAAAGAAACAGATAAAAAATCAGGACTTGACCTTTATGATAATGCAAGTTTAGAAGGAAAGATTTTAGAAGA
TAAATTTCGTAATTCAAGTCGCGGTTTTCAACACTGGATATTGGCGCTTCAAAATGCCACAAAACTTCCGATTAAACTCA
ATGTCTACACAAAAGAAGAGTTGGAAGCAGAAAAACTTGAATTTACAAGTCAACCTGATTTCAAAAAATTGGTTGAAGAA
TCGGAAAAATTTGATAATATCATGGCCCATTCTGATGAAATACAAAAAGCTCAAAAAATTATGAATTATGAATATCCACA
TCAAGCAGCAACAGAGCTTTCAAGTATTCAAACACCAAGTCAGGTTAAAAAACGAAGCTACGAAAAACAATTACAAGTGG
GTGAAATTCAACCGAAAAGTGAATTTACTCGGGTCAAAAAGCTAGATTTTTCTGATTTTGGTCCTAAGAAAGTTACTGCT
GCAGAAATCGGTTCGGCAACTCATAGTTTTATGCAGTATGCAGATTTTTCTCAAGCAGATTTATTTAGTTTTCAAGCGAC
ACTTGATGAAATGGGATTTGATGAAAAAATAAAAAATCAAATTGATATTGCTAAAATTTTGACTTTGTTTGATACAGATT
TCGGTCAGTTTTTATCGGAAAATGTTGATAAAACAGTTAAAGAAGCACCATTTTCAATGTTGAGAACAGATGAATTTGCT
AAAGAGCAGTATATTGTTCGGGGAATTTGTGATGGATTTGTTAAACTTACTGATAAAATCGTTCTATTTGATTATAAGAC
GGATAGATTTACAAGTTCTTCAGCTATTTCTGAAATAAAAGAGCGTTATAGAGATCAGATGAATCTTTATAGTGAGGCTT
TGAAAAAAGCCTACGATGTCAACCAAGTTGACAAGTATCTCATTTTATTAGGAGGCCCTCAGCAAGTTTTTGTTGAAAAA
CTAGATGATTAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(463-879)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(6-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

41.591

100

0.421