Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SIB78_RS12425 Genome accession   NZ_CP138938
Coordinates   2517498..2519414 (-) Length   638 a.a.
NCBI ID   WP_036913091.1    Uniprot ID   -
Organism   Prochlorococcus sp. MIT 0707     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2512498..2524414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB78_RS12405 msrB 2513384..2513890 (+) 507 WP_036913082.1 peptide-methionine (R)-S-oxide reductase MsrB -
  SIB78_RS12410 - 2513817..2515139 (+) 1323 WP_036913084.1 NAD(P)/FAD-dependent oxidoreductase -
  SIB78_RS12415 - 2515114..2516394 (-) 1281 WP_036913087.1 type II secretion system F family protein -
  SIB78_RS12420 pilT 2516411..2517487 (-) 1077 WP_036913090.1 type IV pilus twitching motility protein PilT Machinery gene
  SIB78_RS12425 pilB/pilB1 2517498..2519414 (-) 1917 WP_036913091.1 GspE/PulE family protein Machinery gene
  SIB78_RS12430 grpE 2519413..2520126 (+) 714 WP_036913095.1 nucleotide exchange factor GrpE -
  SIB78_RS12435 dnaJ 2520171..2521307 (+) 1137 WP_036913098.1 molecular chaperone DnaJ -
  SIB78_RS12440 - 2521304..2521549 (+) 246 WP_036913100.1 sulfurtransferase TusA family protein -
  SIB78_RS12445 rsgA 2521536..2522501 (+) 966 WP_036913102.1 ribosome small subunit-dependent GTPase A -
  SIB78_RS12450 - 2522458..2522799 (-) 342 WP_011824714.1 YbaB/EbfC family nucleoid-associated protein -
  SIB78_RS12455 murB 2522824..2523747 (-) 924 WP_036913105.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 638 a.a.        Molecular weight: 70482.37 Da        Isoelectric Point: 6.5031

>NTDB_id=906047 SIB78_RS12425 WP_036913091.1 2517498..2519414(-) (pilB/pilB1) [Prochlorococcus sp. MIT 0707]
MLTVCKFTSRHVDGSSTPPTSGGSPHLQFHFFFVTQGRPIPKATNSIQQRLELELLLQVSVLSHEELVDAVELMANQTTL
DISTWQQFQALPINMHNQHLVVAISDQCNEQTKNQLISVLQSQGFSTEFRLALASDISQLLKPRRSEQHVESASKSKATK
PIAQTPTSLLAGFSAEGVLEEDPEEQARLASSIEDLESSLMDSDSSPVINLVDRILLEALQTEASDVHVEPQQDGLQIRF
RQDGVLQRYIEPLPSRLIPAVTSRFKIMADLDIAERRMAQDGRIRRTYRNRMVDFRVNSLPSRYGEKICLRLLDSSAPQL
GLDKLISNPSALSLVRNLGSKPFGMILVTGPTGSGKSTTLYSLLAERNEPGINISTVEDPIEYTLPGITQCQVNREKGFD
FSTALRAFMRQDPDVLLVGETRDLETAKTAIEAALTGHLVLTTLHCNDASSAIARLNEMGVEPFMVSASLIGIVSQRLLR
RVCRSCRKSYHPTEKELGRFGLMAHTETGVTFFKAHHHGQEKQPCPNCQGSGYKGRVGVYEVLRMNEELATAVAKGATTD
LVRRLALEAGMKTLLGYSLDLVREGHTTLEEVGRMILTDSGLESERRARALSTLTCNVCGAGLQDGWLECPYCLTARQ

Nucleotide


Download         Length: 1917 bp        

>NTDB_id=906047 SIB78_RS12425 WP_036913091.1 2517498..2519414(-) (pilB/pilB1) [Prochlorococcus sp. MIT 0707]
ATGCTGACCGTTTGCAAATTCACGTCTAGACATGTTGATGGGAGTAGCACACCTCCCACAAGCGGCGGAAGCCCGCACCT
CCAATTTCATTTCTTCTTCGTGACCCAGGGCCGACCAATCCCCAAAGCCACCAACAGCATCCAGCAACGACTGGAACTGG
AACTGCTCCTACAAGTCAGCGTGCTTAGCCACGAAGAGCTTGTCGACGCAGTGGAGCTAATGGCCAACCAAACCACTCTT
GACATATCAACGTGGCAACAATTCCAGGCCCTGCCAATCAACATGCACAACCAACATTTGGTTGTAGCCATCTCGGACCA
ATGCAATGAGCAAACCAAAAATCAACTGATCTCAGTGCTGCAGTCCCAAGGCTTCAGCACAGAATTCCGTCTCGCGCTGG
CATCCGACATCAGCCAGCTGCTTAAACCAAGGAGATCTGAGCAACACGTTGAATCTGCATCCAAGTCAAAAGCAACAAAG
CCCATTGCACAAACACCAACCTCCCTGCTGGCAGGATTTAGTGCAGAAGGAGTGCTCGAAGAAGATCCTGAAGAACAAGC
CAGACTTGCTAGTTCCATAGAGGATTTGGAGTCCAGCTTAATGGACTCTGACAGCTCACCAGTCATCAACCTGGTGGACC
GCATACTGCTAGAGGCACTGCAAACAGAAGCCAGCGACGTACACGTTGAGCCGCAACAAGACGGACTACAGATCCGTTTC
CGTCAAGACGGTGTACTGCAGCGCTATATCGAACCCCTCCCGAGCCGGTTGATCCCTGCTGTTACCTCACGCTTCAAGAT
CATGGCCGACCTAGACATCGCAGAACGGCGCATGGCTCAGGACGGTCGCATTCGTCGCACATATCGCAATCGTATGGTCG
ATTTCAGGGTTAATAGCCTGCCAAGCCGTTACGGAGAAAAAATCTGTCTGCGACTCCTCGACAGCAGTGCTCCACAACTA
GGGCTAGACAAACTGATCAGCAACCCCAGTGCTCTCTCTCTCGTACGCAACCTGGGCTCTAAGCCCTTCGGCATGATCCT
TGTGACAGGTCCAACAGGATCAGGCAAGTCAACAACCCTTTACTCCCTACTGGCAGAACGCAACGAGCCTGGTATCAACA
TTTCCACCGTAGAAGATCCCATCGAATACACCCTGCCTGGGATTACCCAATGTCAAGTGAACAGGGAAAAAGGCTTCGAT
TTCAGTACTGCACTGAGAGCCTTCATGCGTCAAGACCCAGACGTTTTGCTGGTCGGTGAAACCCGTGACCTAGAAACCGC
AAAAACCGCCATCGAAGCTGCACTGACTGGTCATCTGGTGCTAACCACGCTGCATTGCAATGACGCATCAAGTGCGATCG
CCCGCCTCAACGAGATGGGCGTGGAACCATTCATGGTGAGCGCCTCATTGATTGGCATCGTCTCTCAACGACTTCTACGA
AGAGTGTGCCGTTCTTGTCGTAAGTCCTATCACCCAACTGAAAAAGAACTGGGGCGATTCGGATTGATGGCCCATACAGA
AACTGGCGTGACCTTTTTCAAGGCCCACCATCACGGTCAAGAAAAACAGCCATGCCCCAACTGTCAAGGCAGCGGCTACA
AGGGCCGAGTGGGTGTCTATGAAGTACTGCGCATGAACGAAGAGCTCGCTACAGCCGTCGCCAAAGGTGCCACTACTGAT
TTGGTAAGACGTCTGGCGCTCGAGGCTGGCATGAAAACTCTGTTGGGCTACAGCCTTGACCTTGTGCGAGAAGGCCACAC
CACCCTTGAGGAAGTGGGCCGAATGATCCTCACCGATTCCGGATTGGAGTCAGAGCGCCGCGCCAGAGCCCTTAGCACTC
TCACCTGCAACGTCTGCGGGGCAGGCCTCCAAGACGGCTGGCTGGAATGTCCCTACTGTCTAACCGCTCGCCAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(215-481)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(48-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

53.808

94.671

0.509