Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ABLU29_RS04645 Genome accession   NZ_CP157498
Coordinates   818970..819740 (+) Length   256 a.a.
NCBI ID   WP_004254655.1    Uniprot ID   Q9CE51
Organism   Lactococcus lactis strain 2B-5     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 813970..824740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU29_RS04615 (ABLU29_04605) rplK 814387..814812 (+) 426 WP_004254643.1 50S ribosomal protein L11 -
  ABLU29_RS04620 (ABLU29_04610) rplA 815108..815797 (+) 690 WP_004254644.1 50S ribosomal protein L1 -
  ABLU29_RS04625 (ABLU29_04615) - 815876..816220 (+) 345 WP_004254648.1 hypothetical protein -
  ABLU29_RS04630 (ABLU29_04620) - 816232..816453 (-) 222 WP_010906257.1 hypothetical protein -
  ABLU29_RS04635 (ABLU29_04625) - 816466..816867 (-) 402 WP_406834776.1 HIT family protein -
  ABLU29_RS04640 (ABLU29_04630) - 817146..818951 (+) 1806 WP_191670149.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  ABLU29_RS04645 (ABLU29_04635) pptA 818970..819740 (+) 771 WP_004254655.1 ABC transporter ATP-binding protein Regulator
  ABLU29_RS04650 (ABLU29_04640) - 819733..820752 (+) 1020 WP_004254656.1 ABC transporter permease -
  ABLU29_RS04655 (ABLU29_04645) - 820791..821417 (-) 627 WP_406834775.1 copper homeostasis protein CutC -
  ABLU29_RS04660 (ABLU29_04650) - 821535..822356 (+) 822 WP_004254659.1 putative RNA methyltransferase -
  ABLU29_RS04665 (ABLU29_04655) - 822379..822660 (-) 282 WP_004254660.1 DUF3270 domain-containing protein -
  ABLU29_RS04670 (ABLU29_04660) - 822881..823804 (+) 924 WP_406834774.1 peptidase U32 family protein -
  ABLU29_RS04675 (ABLU29_04665) - 823941..824108 (+) 168 WP_004254670.1 hypothetical protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28472.99 Da        Isoelectric Point: 4.5320

>NTDB_id=905968 ABLU29_RS04645 WP_004254655.1 818970..819740(+) (pptA) [Lactococcus lactis strain 2B-5]
MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLIGLNGAGKSTTIQEIIGLLTPYSGQIELDGLTLQQDLEGYRRKIGFIP
ETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPF
MGLDPLAIQDLIDLMIDMKKSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTKG
NIPNSKEVVEAGKSNE

Nucleotide


Download         Length: 771 bp        

>NTDB_id=905968 ABLU29_RS04645 WP_004254655.1 818970..819740(+) (pptA) [Lactococcus lactis strain 2B-5]
ATGTTAAAAGTAACAAATCTAACAGGTGGCTATTTGGGGCATCCTGTCTTAAAAGACCTTAATTTTGAAATTAAAGAAGG
CGAGTTAGTTGGACTCATTGGTTTAAATGGTGCAGGAAAATCGACGACAATTCAAGAAATTATTGGACTTTTGACTCCTT
ATTCTGGACAAATTGAATTAGACGGCTTAACTTTACAACAAGATTTAGAAGGCTATCGTAGAAAAATTGGTTTCATTCCA
GAAACACCAAGTTTGTATGAAGAATTGACTTTGCGTGAACATATTGAAGTGACAGCTTTAGCTTACGGGATTTCTGTTGA
CTTGGCTTTTGAACGTGCTGAAAAATTATTAGAAACTTTCCGCTTGAGTGATAAATTAGATTGGTTCCCTGTGAATTTTT
CAAAAGGGATGAAACAAAAAGTGATGATTATCTGCGCATTCTTAGTGGAACCTTCGCTCTATATTGTTGATGAACCTTTT
ATGGGACTTGACCCGCTTGCGATTCAGGATTTGATTGACTTGATGATTGACATGAAAAAATCAGGAAGTTCGATTTTAAT
GAGTACACATATCTTGTCCACAGCTGAAAAATTCTGTGATAAATTTATTGTTTTGCATGAAGGTCAAGTTGTTGCTTTTG
GAACAGTAGAAGAATTGCGTACTCAATTTAATCAGCCTAAGGCAAGTTTAGATGAAATTTATCTTGCCTTAACAAAAGGA
AATATTCCAAACTCTAAAGAAGTTGTAGAGGCAGGAAAGTCAAATGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CE51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

67.355

94.531

0.637
  pptA Streptococcus thermophilus LMD-9

66.942

94.531

0.633