Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BSG8_RS18165 Genome accession   NZ_AP025224
Coordinates   3369035..3369724 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain G8     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3364035..3374724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG8_RS18130 (BSG8_35900) flgN 3364215..3364697 (-) 483 WP_014481048.1 flagellar protein FlgN -
  BSG8_RS18135 (BSG8_35910) flgM 3364713..3364979 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSG8_RS18140 (BSG8_35920) yvyF 3365060..3365479 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  BSG8_RS18145 (BSG8_35930) comFC 3365552..3366274 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  BSG8_RS18150 (BSG8_35940) comFB 3366238..3366534 (-) 297 WP_003227989.1 late competence protein ComFB -
  BSG8_RS18155 (BSG8_35950) comFA 3366594..3367985 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  BSG8_RS18160 (BSG8_35960) fakBA 3368092..3368937 (-) 846 WP_014481053.1 DegV family protein -
  BSG8_RS18165 (BSG8_35970) degU 3369035..3369724 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  BSG8_RS18170 (BSG8_35980) degS 3369807..3370964 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  BSG8_RS18175 (BSG8_35990) - 3371181..3371834 (+) 654 WP_014481055.1 YigZ family protein -
  BSG8_RS18180 (BSG8_36000) - 3371834..3372826 (+) 993 WP_014481056.1 LCP family protein -
  BSG8_RS18185 (BSG8_36010) - 3373433..3373612 (+) 180 WP_281870458.1 hypothetical protein -
  BSG8_RS18190 (BSG8_36030) - 3373853..3374305 (+) 453 WP_014481058.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=90591 BSG8_RS18165 WP_014481054.1 3369035..3369724(-) (degU) [Bacillus subtilis subsp. natto strain G8]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=90591 BSG8_RS18165 WP_014481054.1 3369035..3369724(-) (degU) [Bacillus subtilis subsp. natto strain G8]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment