Detailed information NTG0905683

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABK819_RS07130
• Genome accession: NZ_CP157460
• Coordinates: 1504462..1505466 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa isolate PA103_delta_UT+fleQ
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1499462..1510466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABK819_RS07100 (ABK819_07090)	fghA	1499554..1500405 (+)	852	WP_019484567.1	S-formylglutathione hydrolase	-
ABK819_RS07105 (ABK819_07095)	ispF	1500476..1500949 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABK819_RS07110 (ABK819_07100)	truD	1500946..1502013 (+)	1068	WP_019484568.1	tRNA pseudouridine(13) synthase TruD	-
ABK819_RS07115 (ABK819_07105)	surE	1502001..1502750 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ABK819_RS07120 (ABK819_07110)	-	1502783..1503418 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ABK819_RS07125 (ABK819_07115)	-	1503464..1504357 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
ABK819_RS07130 (ABK819_07120)	rpoS	1504462..1505466 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ABK819_RS07135 (ABK819_07125)	fdxA	1505893..1506216 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ABK819_RS07140 (ABK819_07130)	mutS	1506283..1508850 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ABK819_RS07145 (ABK819_07135)	-	1508976..1509983 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=905683 ABK819_RS07130 WP_003113871.1 1504462..1505466(+) (rpoS) [Pseudomonas aeruginosa isolate PA103_delta_UT+fleQ]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=905683 ABK819_RS07130 WP_003113871.1 1504462..1505466(+) (rpoS) [Pseudomonas aeruginosa isolate PA103_delta_UT+fleQ]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653