Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AABJ88_RS19135 | Genome accession | NZ_AP027813 |
| Coordinates | 3906163..3906603 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360904.1 | Uniprot ID | P36647 |
| Organism | Escherichia coli strain 2017.13.01CC | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3901163..3911603
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABJ88_RS19115 (VEE58_37200) | aroP | 3902161..3903534 (+) | 1374 | WP_000969915.1 | aromatic amino acid transporter AroP | - |
| AABJ88_RS19120 (VEE58_37210) | ampE | 3903577..3904431 (-) | 855 | WP_000172005.1 | beta-lactamase regulator AmpE | - |
| AABJ88_RS19125 (VEE58_37220) | ampD | 3904428..3904979 (-) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AABJ88_RS19130 (VEE58_37230) | nadC | 3905067..3905960 (+) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AABJ88_RS19135 (VEE58_37240) | pilA | 3906163..3906603 (+) | 441 | WP_000360904.1 | prepilin peptidase-dependent pilin | Machinery gene |
| AABJ88_RS19140 (VEE58_37250) | pilB | 3906613..3907998 (+) | 1386 | WP_001025145.1 | type II secretion system protein GspE | Machinery gene |
| AABJ88_RS19145 (VEE58_37260) | hofC | 3908021..3909190 (+) | 1170 | WP_225387990.1 | protein transport protein HofC | - |
| AABJ88_RS19150 (VEE58_37270) | guaC | 3909225..3910268 (-) | 1044 | WP_001217338.1 | GMP reductase | - |
| AABJ88_RS19155 | - | 3910424..3910468 (-) | 45 | WP_120795372.1 | protein YacM | - |
| AABJ88_RS19160 (VEE58_37280) | coaE | 3910493..3911113 (+) | 621 | WP_001269520.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15621.75 Da Isoelectric Point: 4.3938
>NTDB_id=90568 AABJ88_RS19135 WP_000360904.1 3906163..3906603(+) (pilA) [Escherichia coli strain 2017.13.01CC]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=90568 AABJ88_RS19135 WP_000360904.1 3906163..3906603(+) (pilA) [Escherichia coli strain 2017.13.01CC]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |