Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SGQ75_RS07580 Genome accession   NZ_CP138880
Coordinates   1583640..1584086 (-) Length   148 a.a.
NCBI ID   WP_075583651.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 98     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1578640..1589086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGQ75_RS07550 (SGQ75_07550) gcvPA 1579566..1580912 (-) 1347 WP_000019688.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SGQ75_RS07555 (SGQ75_07555) gcvT 1580932..1582023 (-) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  SGQ75_RS07560 (SGQ75_07560) - 1582182..1582706 (-) 525 WP_001015122.1 shikimate kinase -
  SGQ75_RS07565 (SGQ75_07565) - 1582696..1582842 (-) 147 WP_001789879.1 hypothetical protein -
  SGQ75_RS07570 (SGQ75_07570) comGF 1582939..1583436 (-) 498 WP_029697681.1 competence type IV pilus minor pilin ComGF Machinery gene
  SGQ75_RS07575 (SGQ75_07575) comGE 1583354..1583653 (-) 300 WP_217654599.1 competence protein ComGE Machinery gene
  SGQ75_RS07580 (SGQ75_07580) comGD 1583640..1584086 (-) 447 WP_075583651.1 competence type IV pilus minor pilin ComGD Machinery gene
  SGQ75_RS07585 (SGQ75_07585) comGC 1584064..1584375 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SGQ75_RS07590 (SGQ75_07590) comGB 1584389..1585459 (-) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  SGQ75_RS07595 (SGQ75_07595) comGA 1585431..1586405 (-) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  SGQ75_RS07600 (SGQ75_07600) - 1586457..1587080 (-) 624 WP_001223006.1 MBL fold metallo-hydrolase -
  SGQ75_RS07605 (SGQ75_07605) - 1587077..1587406 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SGQ75_RS07610 (SGQ75_07610) - 1587406..1588392 (-) 987 WP_000161315.1 ROK family glucokinase -
  SGQ75_RS07615 (SGQ75_07615) - 1588389..1588592 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17113.28 Da        Isoelectric Point: 10.3312

>NTDB_id=905554 SGQ75_RS07580 WP_075583651.1 1583640..1584086(-) (comGD) [Staphylococcus aureus strain 98]
MEKQLQIRKQSAFTMIEILVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=905554 SGQ75_RS07580 WP_075583651.1 1583640..1584086(-) (comGD) [Staphylococcus aureus strain 98]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATACTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGACGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986