Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AABJ88_RS08740 Genome accession   NZ_AP027813
Coordinates   1822569..1823996 (-) Length   475 a.a.
NCBI ID   WP_029397760.1    Uniprot ID   -
Organism   Escherichia coli strain 2017.13.01CC     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1817569..1828996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ88_RS08710 (VEE58_16940) yeeZ 1817624..1818448 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  AABJ88_RS08715 (VEE58_16950) yeeY 1818494..1819423 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AABJ88_RS08720 yoeI 1819638..1819700 (+) 63 WP_010723108.1 membrane protein YoeI -
  AABJ88_RS08725 (VEE58_16960) plaP 1819690..1821048 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AABJ88_RS08730 (VEE58_16970) tsuA 1821227..1822285 (+) 1059 WP_029397759.1 thiosulfate utilization transporter TsuA/YeeE -
  AABJ88_RS08735 (VEE58_16980) tsuB 1822299..1822526 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AABJ88_RS08740 (VEE58_16990) sbcB 1822569..1823996 (-) 1428 WP_029397760.1 exodeoxyribonuclease I Machinery gene
  AABJ88_RS08745 (VEE58_17000) dacD 1824205..1825371 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AABJ88_RS08750 (VEE58_17010) sbmC 1825490..1825963 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  AABJ88_RS08755 (VEE58_17020) yeeA 1826161..1827219 (+) 1059 WP_001200890.1 FUSC family protein -
  AABJ88_RS08760 (VEE58_17030) tmaR 1827391..1827720 (+) 330 WP_000450409.1 DUF496 family protein -
  AABJ88_RS08765 - 1827821..1828003 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AABJ88_RS08770 - 1828057..1828203 (+) 147 Protein_1713 transposase domain-containing protein -
  AABJ88_RS08775 - 1828492..1828572 (-) 81 Protein_1714 hypothetical protein -
  AABJ88_RS08780 (VEE58_17040) yeeW 1828618..1828812 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.76 Da        Isoelectric Point: 5.4720

>NTDB_id=90540 AABJ88_RS08740 WP_029397760.1 1822569..1823996(-) (sbcB) [Escherichia coli strain 2017.13.01CC]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPIKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=90540 AABJ88_RS08740 WP_029397760.1 1822569..1823996(-) (sbcB) [Escherichia coli strain 2017.13.01CC]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACAGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGATTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment