Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABJ88_RS05485 Genome accession   NZ_AP027813
Coordinates   1118864..1119379 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2017.13.01CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1113864..1124379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ88_RS05440 (VEE58_10640) csrA 1114316..1114501 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABJ88_RS05470 (VEE58_10650) yqaB 1116094..1116660 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABJ88_RS05475 (VEE58_10660) yqaA 1116657..1117085 (+) 429 WP_001287454.1 YqaA family protein -
  AABJ88_RS05480 (VEE58_10670) gshA 1117158..1118714 (+) 1557 WP_023281437.1 glutamate--cysteine ligase -
  AABJ88_RS05485 (VEE58_10680) luxS 1118864..1119379 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABJ88_RS05490 (VEE58_10690) emrB 1119443..1120981 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABJ88_RS05495 (VEE58_10700) emrA 1120998..1122170 (-) 1173 WP_124846195.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABJ88_RS05500 (VEE58_10710) emrR 1122297..1122827 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABJ88_RS05505 (VEE58_10720) ygaH 1122918..1123253 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AABJ88_RS05510 (VEE58_10730) ygaZ 1123243..1123980 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=90530 AABJ88_RS05485 WP_001130211.1 1118864..1119379(+) (luxS) [Escherichia coli strain 2017.13.01CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=90530 AABJ88_RS05485 WP_001130211.1 1118864..1119379(+) (luxS) [Escherichia coli strain 2017.13.01CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment