Detailed information NTG0905271

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABK061_RS05175
• Genome accession: NZ_CP157415
• Coordinates: 1077216..1078208 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC22
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1072216..1083208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABK061_RS05145	ispD	1072277..1072987 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABK061_RS05150	ispF	1072987..1073466 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABK061_RS05155	truD	1073463..1074512 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABK061_RS05160	surE	1074493..1075254 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABK061_RS05165	pcm	1075248..1075874 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABK061_RS05170	nlpD	1076059..1077153 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABK061_RS05175	rpoS	1077216..1078208 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABK061_RS05180	ygbN	1078302..1079666 (-)	1365	WP_000104441.1	GntP family transporter	-
ABK061_RS05185	ygbM	1079755..1080531 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ABK061_RS05190	ygbL	1080536..1081174 (-)	639	WP_001278994.1	aldolase	-
ABK061_RS05195	otnK	1081171..1082433 (-)	1263	WP_072649794.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=905271 ABK061_RS05175 WP_000081550.1 1077216..1078208(+) (rpoS) [Escherichia coli strain EC22]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=905271 ABK061_RS05175 WP_000081550.1 1077216..1078208(+) (rpoS) [Escherichia coli strain EC22]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715