Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ABKP55_RS23205 Genome accession   NZ_CP157327
Coordinates   4702095..4703120 (+) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain 2024CK-00475     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4697095..4708120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKP55_RS23180 (ABKP55_23180) metJ 4697532..4697849 (+) 318 WP_000852812.1 met regulon transcriptional regulator MetJ -
  ABKP55_RS23185 (ABKP55_23185) yiiX 4698033..4698641 (+) 609 WP_000797341.1 YiiX family permuted papain-like enzyme -
  ABKP55_RS23190 (ABKP55_23190) - 4698648..4699271 (+) 624 WP_000720774.1 TIGR02117 family protein -
  ABKP55_RS23195 (ABKP55_23195) rpmE 4699326..4699538 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  ABKP55_RS23200 (ABKP55_23200) priA 4699741..4701939 (+) 2199 WP_001300388.1 primosomal protein N' Machinery gene
  ABKP55_RS23205 (ABKP55_23205) cytR 4702095..4703120 (+) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  ABKP55_RS23210 (ABKP55_23210) ftsN 4703212..4704171 (+) 960 WP_000068828.1 cell division protein FtsN -
  ABKP55_RS23215 (ABKP55_23215) hslV 4704264..4704794 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  ABKP55_RS23220 (ABKP55_23220) hslU 4704804..4706135 (+) 1332 WP_001293341.1 HslU--HslV peptidase ATPase subunit -
  ABKP55_RS23225 (ABKP55_23225) menA 4706202..4707128 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ABKP55_RS23230 (ABKP55_23230) rraA 4707221..4707706 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  ABKP55_RS23235 (ABKP55_23235) zapB 4707791..4708036 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=904929 ABKP55_RS23205 WP_000644904.1 4702095..4703120(+) (cytR) [Escherichia coli strain 2024CK-00475]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=904929 ABKP55_RS23205 WP_000644904.1 4702095..4703120(+) (cytR) [Escherichia coli strain 2024CK-00475]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628