Detailed information NTG0904878

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABKP55_RS05415
• Genome accession: NZ_CP157327
• Coordinates: 1122128..1123120 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2024CK-00475
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1117128..1128120

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABKP55_RS05385 (ABKP55_05385)	ispD	1117189..1117899 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABKP55_RS05390 (ABKP55_05390)	ispF	1117899..1118378 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABKP55_RS05395 (ABKP55_05395)	truD	1118375..1119424 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABKP55_RS05400 (ABKP55_05400)	surE	1119405..1120166 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABKP55_RS05405 (ABKP55_05405)	pcm	1120160..1120786 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABKP55_RS05410 (ABKP55_05410)	nlpD	1120971..1122065 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABKP55_RS05415 (ABKP55_05415)	rpoS	1122128..1123120 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABKP55_RS05420 (ABKP55_05420)	ygbN	1123214..1124578 (-)	1365	WP_000104441.1	GntP family transporter	-
ABKP55_RS05425 (ABKP55_05425)	ygbM	1124667..1125443 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ABKP55_RS05430 (ABKP55_05430)	ygbL	1125448..1126086 (-)	639	WP_001278994.1	aldolase	-
ABKP55_RS05435 (ABKP55_05435)	otnK	1126083..1127345 (-)	1263	WP_072649794.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=904878 ABKP55_RS05415 WP_000081550.1 1122128..1123120(+) (rpoS) [Escherichia coli strain 2024CK-00475]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=904878 ABKP55_RS05415 WP_000081550.1 1122128..1123120(+) (rpoS) [Escherichia coli strain 2024CK-00475]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715