Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R8547_RS26580 Genome accession   NZ_CP138757
Coordinates   5678255..5679775 (+) Length   506 a.a.
NCBI ID   WP_024274872.1    Uniprot ID   A0AAN5RCN2
Organism   Klebsiella oxytoca strain 86     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5673255..5684775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8547_RS26560 (R8547_26560) ilvE 5674820..5675749 (-) 930 WP_004107600.1 branched-chain-amino-acid transaminase -
  R8547_RS26565 (R8547_26565) ilvM 5675766..5676023 (-) 258 WP_004107599.1 acetolactate synthase 2 small subunit -
  R8547_RS26570 (R8547_26570) ilvG 5676020..5677666 (-) 1647 WP_024274873.1 acetolactate synthase 2 catalytic subunit -
  R8547_RS26575 (R8547_26575) ilvL 5677806..5677904 (-) 99 WP_001311244.1 ilv operon leader peptide -
  R8547_RS26580 (R8547_26580) comM 5678255..5679775 (+) 1521 WP_024274872.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R8547_RS26585 (R8547_26585) - 5679799..5680137 (-) 339 WP_004097464.1 DUF413 domain-containing protein -
  R8547_RS26590 (R8547_26590) hdfR 5680256..5681077 (+) 822 WP_024274871.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55332.71 Da        Isoelectric Point: 8.4834

>NTDB_id=904839 R8547_RS26580 WP_024274872.1 5678255..5679775(+) (comM) [Klebsiella oxytoca strain 86]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAWPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNAPRLNQYEFVGELALTGALRGVPGAISSAMEAIRAGRKIIVSHENSPEVGLIGGSDCLIAAHL
QEVCAFLEGKNPLNHPIPEAESSDESSLDLREVIGQQQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVNSSYAMKNWRRRPFRAPHHSASLAAMVGGGSIPTPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPEQTLRYLARLSGPFLDRFDLSLEIPLPPPGVLSRGTNEE
ESSACVRQRVLAAHERQLSRQKKLNANLGNNEMKIWCQLHQDDAIWLEQTLTQLGLSIRAWQRLLKVSRTIADIEKVDRI
ERRHLQEALGYRAIDRMLSHLQKMMT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=904839 R8547_RS26580 WP_024274872.1 5678255..5679775(+) (comM) [Klebsiella oxytoca strain 86]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTTGGGATCGGCGCCCCCCTTATCACAGTTGAAGTTCATATCAGCAA
CGGACTCCCTGGCCTGACGATGGTAGGGTTGCCTGAAACAACGGTCAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGCTACGCCTGGCCGGCGAAAAAAATCACCATCAATCTGGCGCCAGCCGATTTGCCAAAAGAAGGGGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCTGAGCAGCTAAATGCTCCCAGGCTAAATCAATACGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTACGTGGCGTTCCTGGGGCTATATCCAGCGCGATGGAGGCGATAAGAGCGGGCA
GAAAGATTATTGTCTCTCATGAGAATTCTCCTGAGGTGGGTTTAATCGGCGGCAGTGACTGTCTTATCGCCGCCCATCTT
CAGGAGGTCTGCGCCTTTCTGGAGGGAAAAAACCCGCTAAATCATCCCATTCCGGAAGCGGAGAGCTCAGATGAGTCTTC
ATTAGACTTGCGCGAGGTTATTGGTCAGCAGCAAGGAAAGCGAGCGCTGGAAATTATCGCTGCAGGCGGACATAACCTGC
TGATGATAGGCCCACCCGGCACAGGGAAAACGATGCTTGCGAGTCGGCTGCCTGGGCTACTACCGCCGCTGAGTAACCAG
GAAGCGCTGGAAAGCGCGGCAATACTTAGCCTGGTCAATTCCAGTTATGCGATGAAAAACTGGCGCCGCAGGCCATTTCG
AGCTCCGCATCATAGCGCGTCCCTGGCTGCGATGGTGGGTGGCGGCTCTATTCCAACACCGGGAGAGATCTCTCTCGCTC
ATAATGGCGTGCTGTTCCTGGATGAGCTGCCCGAATTTGAACGCAGGGTTCTGGATGCATTAAGAGAACCGATTGAATCC
GGGGTAATCCATATCTCCCGCACGCGCGCGAAAATCGATTATCCCGCCCGTTTTCAGCTTATTGCAGCAATGAATCCCAG
CCCCACGGGCCACTATCAGGGTCAGCATAATCGCGCATCTCCAGAACAGACGCTACGCTACCTGGCCCGTTTATCTGGCC
CATTTCTTGACCGTTTCGATCTCTCACTGGAAATTCCTCTGCCGCCGCCGGGGGTGCTTAGCCGGGGAACAAACGAAGAA
GAGAGCAGCGCCTGCGTACGCCAACGCGTTTTGGCTGCGCACGAAAGGCAACTGTCACGACAGAAAAAACTCAATGCAAA
TCTGGGGAATAATGAGATGAAAATCTGGTGCCAGCTTCATCAAGATGACGCAATCTGGCTGGAGCAGACGCTTACGCAAC
TGGGGCTCTCAATCCGGGCCTGGCAGCGCCTGCTTAAAGTTTCACGCACGATTGCCGATATTGAGAAGGTCGATCGTATT
GAACGCCGTCATTTGCAGGAGGCTCTTGGCTATCGGGCAATAGACAGAATGTTGAGCCATCTGCAAAAAATGATGACGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.332

100

0.597
  comM Glaesserella parasuis strain SC1401

58.939

100

0.593
  comM Vibrio cholerae strain A1552

59.046

99.407

0.587
  comM Vibrio campbellii strain DS40M4

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

48.79

98.024

0.478
  comM Legionella pneumophila strain ERS1305867

48.79

98.024

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.204

100

0.445