Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LPH32_RS05895 Genome accession   NZ_AP025214
Coordinates   1154867..1155496 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2017.09.02CC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1149867..1160496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH32_RS05880 (VEGS19_A11150) helD 1150109..1152163 (-) 2055 WP_053290900.1 DNA helicase IV -
  LPH32_RS05885 (VEGS19_A11160) yccF 1152286..1152732 (+) 447 WP_001261236.1 YccF domain-containing protein -
  LPH32_RS05890 (VEGS19_A11170) yccS 1152742..1154904 (+) 2163 WP_000875041.1 YccS family putative transporter -
  LPH32_RS05895 (VEGS19_A11180) sxy/tfoX 1154867..1155496 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LPH32_RS05900 (VEGS19_A11190) sulA 1155714..1156223 (+) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  LPH32_RS05905 (VEGS19_A11210) ompA 1156579..1157631 (+) 1053 WP_001563012.1 porin OmpA -
  LPH32_RS05910 (VEGS19_A11220) matP 1157709..1158161 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  LPH32_RS05915 (VEGS19_A11230) ycbZ 1158347..1160107 (+) 1761 WP_053290899.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=90482 LPH32_RS05895 WP_000839153.1 1154867..1155496(-) (sxy/tfoX) [Escherichia coli strain 2017.09.02CC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=90482 LPH32_RS05895 WP_000839153.1 1154867..1155496(-) (sxy/tfoX) [Escherichia coli strain 2017.09.02CC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment