Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LPH28_RS13920 Genome accession   NZ_AP025209
Coordinates   2853571..2854200 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2017.06.04CC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2848571..2859200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH28_RS13905 (VEGS18_A27180) helD 2848813..2850867 (-) 2055 WP_229434163.1 DNA helicase IV -
  LPH28_RS13910 (VEGS18_A27190) yccF 2850990..2851436 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LPH28_RS13915 (VEGS18_A27200) yccS 2851446..2853608 (+) 2163 WP_000875061.1 YccS family putative transporter -
  LPH28_RS13920 (VEGS18_A27210) sxy/tfoX 2853571..2854200 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LPH28_RS13925 (VEGS18_A27220) sulA 2854419..2854928 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  LPH28_RS13930 (VEGS18_A27240) ompA 2855285..2856337 (+) 1053 WP_001361736.1 porin OmpA -
  LPH28_RS13935 (VEGS18_A27250) matP 2856413..2856865 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LPH28_RS13940 (VEGS18_A27260) ycbZ 2857051..2858811 (+) 1761 WP_112951879.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=90470 LPH28_RS13920 WP_000839153.1 2853571..2854200(-) (sxy/tfoX) [Escherichia coli strain 2017.06.04CC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=90470 LPH28_RS13920 WP_000839153.1 2853571..2854200(-) (sxy/tfoX) [Escherichia coli strain 2017.06.04CC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment