Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABJ86_RS05135 Genome accession   NZ_AP027800
Coordinates   1052810..1053325 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2017.10.01CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1047810..1058325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ86_RS05090 (VEE56_09880) csrA 1048531..1048716 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABJ86_RS05120 (VEE56_09890) yqaB 1050040..1050606 (+) 567 WP_000273292.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABJ86_RS05125 (VEE56_09900) yqaA 1050603..1051031 (+) 429 WP_001287454.1 YqaA family protein -
  AABJ86_RS05130 (VEE56_09910) gshA 1051104..1052660 (+) 1557 WP_032218630.1 glutamate--cysteine ligase -
  AABJ86_RS05135 (VEE56_09920) luxS 1052810..1053325 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABJ86_RS05140 (VEE56_09930) emrB 1053389..1054927 (-) 1539 WP_001817020.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABJ86_RS05145 (VEE56_09940) emrA 1054944..1056116 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABJ86_RS05150 (VEE56_09950) emrR 1056243..1056773 (-) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABJ86_RS05155 (VEE56_09960) ygaH 1056864..1057199 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  AABJ86_RS05160 (VEE56_09970) ygaZ 1057189..1057926 (-) 738 WP_000445661.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=90451 AABJ86_RS05135 WP_001130211.1 1052810..1053325(+) (luxS) [Escherichia coli strain 2017.10.01CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=90451 AABJ86_RS05135 WP_001130211.1 1052810..1053325(+) (luxS) [Escherichia coli strain 2017.10.01CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAGCTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment