NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	SGW60_RS13610	Genome accession	NZ_CP138667
Coordinates	2748615..2749085 (+)	Length	156 a.a.
NCBI ID	WP_047447780.1	Uniprot ID	-
Organism	Staphylococcus aureus strain DA70900
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2743615..2754085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGW60_RS13575	-	2743939..2744259 (+)	321	WP_001120197.1	DUF771 domain-containing protein	-
SGW60_RS13580	-	2744256..2744417 (+)	162	WP_000066020.1	DUF1270 domain-containing protein	-
SGW60_RS13585	-	2744510..2744770 (+)	261	WP_000291488.1	DUF1108 family protein	-
SGW60_RS13590	-	2744779..2745042 (+)	264	WP_001205732.1	hypothetical protein	-
SGW60_RS13595	-	2745051..2746994 (+)	1944	WP_000700557.1	AAA family ATPase	-
SGW60_RS13600	-	2746996..2747916 (+)	921	WP_338433378.1	recombinase RecT	-
SGW60_RS13605	-	2747997..2748614 (+)	618	WP_077517322.1	MBL fold metallo-hydrolase	-
SGW60_RS13610	ssbA	2748615..2749085 (+)	471	WP_047447780.1	single-stranded DNA-binding protein	Machinery gene
SGW60_RS13615	-	2749115..2750008 (+)	894	WP_070044026.1	DnaD domain-containing protein	-
SGW60_RS13620	-	2750015..2750233 (+)	219	WP_070044025.1	hypothetical protein	-
SGW60_RS13625	-	2750242..2750646 (+)	405	WP_338433379.1	RusA family crossover junction endodeoxyribonuclease	-
SGW60_RS13630	-	2750659..2751027 (+)	369	WP_338433380.1	SA1788 family PVL leukocidin-associated protein	-
SGW60_RS13635	-	2751031..2751273 (+)	243	WP_000131366.1	SAV1978 family virulence-associated passenger protein	-
SGW60_RS13640	-	2751338..2751787 (+)	450	WP_000982711.1	YopX family protein	-
SGW60_RS13645	-	2751784..2752293 (+)	510	WP_001105599.1	hypothetical protein	-
SGW60_RS13650	-	2752290..2752700 (+)	411	WP_000197967.1	hypothetical protein	-
SGW60_RS13655	-	2752693..2753229 (+)	537	WP_001066444.1	dUTPase	-
SGW60_RS13660	-	2753266..2753472 (+)	207	WP_000195820.1	DUF1381 domain-containing protein	-
SGW60_RS13665	-	2753469..2753618 (+)	150	WP_000595265.1	transcriptional activator RinB	-
SGW60_RS13670	-	2753618..2753818 (+)	201	WP_000265039.1	DUF1514 family protein	-

Sequence

Protein

Download Length: 156 a.a. Molecular weight: 17642.55 Da Isoelectric Point: 5.2672

                                >NTDB_id=904402 SGW60_RS13610 WP_047447780.1 2748615..2749085(+) (ssbA) [Staphylococcus aureus strain DA70900]

MINRIILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR

NYENKEGQRVYVTEVVADSIQFLEPKNTNDSQQDAYQQQVQQTRGQSQYPYNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide

Download Length: 471 bp

                                >NTDB_id=904402 SGW60_RS13610 WP_047447780.1 2748615..2749085(+) (ssbA) [Staphylococcus aureus strain DA70900]

ATGATAAACAGAATAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC

ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAACGCGAGGCAGATTTTATTAATGTCATCGTAT

TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGA

AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCAAAGAA

CACAAATGACTCTCAACAAGATGCATATCAACAACAAGTACAACAAACACGTGGGCAATCGCAATATCCATATAACAAAC

CAGTAAAAGATAATCCGTTCGCAAATGCTAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.367	100	0.628
ssb	Latilactobacillus sakei subsp. sakei 23K	52.941	100	0.577
ssbB	Bacillus subtilis subsp. subtilis str. 168	59.434	67.949	0.404
ssb	Vibrio cholerae strain A1552	31.844	100	0.365

Detailed information NTG0904402