Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SGW60_RS02375 Genome accession   NZ_CP138667
Coordinates   440198..440644 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70900     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435198..445644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW60_RS02340 - 435692..435895 (+) 204 WP_000087561.1 YqgQ family protein -
  SGW60_RS02345 - 435892..436878 (+) 987 WP_000161314.1 ROK family glucokinase -
  SGW60_RS02350 - 436878..437207 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SGW60_RS02355 - 437204..437827 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SGW60_RS02360 comGA 437879..438853 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SGW60_RS02365 comGB 438825..439895 (+) 1071 WP_338433494.1 competence type IV pilus assembly protein ComGB Machinery gene
  SGW60_RS02370 comGC 439909..440220 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SGW60_RS02375 comGD 440198..440644 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  SGW60_RS02380 comGE 440631..440930 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  SGW60_RS02385 comGF 440848..441345 (+) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  SGW60_RS02390 - 441442..441588 (+) 147 WP_001789879.1 hypothetical protein -
  SGW60_RS02395 - 441578..442102 (+) 525 WP_001015119.1 shikimate kinase -
  SGW60_RS02400 gcvT 442261..443352 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  SGW60_RS02405 gcvPA 443372..444718 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=904376 SGW60_RS02375 WP_001788899.1 440198..440644(+) (comGD) [Staphylococcus aureus strain DA70900]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=904376 SGW60_RS02375 WP_001788899.1 440198..440644(+) (comGD) [Staphylococcus aureus strain DA70900]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1