Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   SGW58_RS13615 Genome accession   NZ_CP138666
Coordinates   2777619..2778338 (-) Length   239 a.a.
NCBI ID   WP_338435085.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70300     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2772619..2783338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW58_RS13600 - 2773706..2774656 (+) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -
  SGW58_RS13605 - 2774805..2776289 (+) 1485 WP_001791588.1 sucrose-6-phosphate hydrolase -
  SGW58_RS13610 - 2776286..2777245 (+) 960 WP_001253292.1 carbohydrate kinase -
  SGW58_RS13615 agrA 2777619..2778338 (-) 720 WP_338435085.1 LytTR family DNA-binding domain-containing protein Regulator
  SGW58_RS13620 - 2778353..2779645 (-) 1293 WP_000387814.1 GHKL domain-containing protein -
  SGW58_RS13625 - 2779670..2779810 (-) 141 WP_000735197.1 cyclic lactone autoinducer peptide -
  SGW58_RS13630 - 2779814..2780377 (-) 564 WP_001105709.1 accessory gene regulator AgrB -
  SGW58_RS13635 hld 2780667..2780747 (+) 81 WP_000046022.1 delta-hemolysin -
  SGW58_RS13640 - 2781350..2782135 (-) 786 WP_000867948.1 carbon-nitrogen family hydrolase -
  SGW58_RS13645 - 2782496..2783122 (-) 627 WP_000522388.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 28070.02 Da        Isoelectric Point: 5.6151

>NTDB_id=904360 SGW58_RS13615 WP_338435085.1 2777619..2778338(-) (agrA) [Staphylococcus aureus strain DA70300]
MYEIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHD
PVGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDI
MFFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 720 bp        

>NTDB_id=904360 SGW58_RS13615 WP_338435085.1 2777619..2778338(-) (agrA) [Staphylococcus aureus strain DA70300]
ATGTATGAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATCAAAAATTATATAATGAT
AGAAGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACA
TAGGCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGAC
CCAGTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGA
TTTTATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAAT
TATTATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATT
ATGTTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTT
AAAAGAACTGAGTCAATTAGATGATCGTTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGTCATAATATCGAATCTA
TTGATTCGAAAGAGCGTATTGTTTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(152-238)

Response regulator receiver domain (Response_reg)

(4-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.578

99.163

0.987