Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SGW58_RS13280 Genome accession   NZ_CP138666
Coordinates   2708562..2708957 (+) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   A0A166JXQ7
Organism   Staphylococcus aureus strain DA70300     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2703562..2713957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW58_RS13255 - 2704505..2704909 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  SGW58_RS13260 - 2705788..2706021 (+) 234 WP_000384523.1 DUF1146 family protein -
  SGW58_RS13265 murA 2706132..2707397 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SGW58_RS13270 fabZ 2707431..2707871 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SGW58_RS13275 - 2707928..2708368 (-) 441 WP_000846746.1 YwpF-like family protein -
  SGW58_RS13280 ssb 2708562..2708957 (+) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  SGW58_RS13285 sceD 2709346..2710041 (+) 696 WP_000752015.1 lytic transglycosylase SceD -
  SGW58_RS13290 tenA 2710566..2711255 (+) 690 WP_000396068.1 thiaminase II -
  SGW58_RS13295 thiD 2711248..2712078 (+) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SGW58_RS13300 thiM 2712062..2712853 (+) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  SGW58_RS13305 thiE 2712855..2713496 (+) 642 WP_000483150.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=904359 SGW58_RS13280 WP_000932696.1 2708562..2708957(+) (ssb) [Staphylococcus aureus strain DA70300]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=904359 SGW58_RS13280 WP_000932696.1 2708562..2708957(+) (ssb) [Staphylococcus aureus strain DA70300]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166JXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985