Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   SGW56_RS13565 Genome accession   NZ_CP138663
Coordinates   2735907..2736623 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain DA70518     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2730907..2741623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW56_RS13545 - 2731999..2732949 (+) 951 WP_000790314.1 LacI family DNA-binding transcriptional regulator -
  SGW56_RS13550 - 2733098..2734582 (+) 1485 WP_000141419.1 sucrose-6-phosphate hydrolase -
  SGW56_RS13555 - 2734579..2735538 (+) 960 WP_001253295.1 carbohydrate kinase -
  SGW56_RS13560 - 2735728..2735835 (-) 108 WP_031785433.1 hypothetical protein -
  SGW56_RS13565 agrA 2735907..2736623 (-) 717 WP_000688492.1 LytTR family DNA-binding domain-containing protein Regulator
  SGW56_RS13570 - 2736642..2737934 (-) 1293 WP_001657119.1 GHKL domain-containing protein -
  SGW56_RS13575 - 2737959..2738099 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  SGW56_RS13580 agrB 2738096..2738665 (-) 570 WP_001105708.1 accessory gene regulator AgrB -
  SGW56_RS13585 hld 2738955..2739035 (+) 81 WP_000046022.1 delta-hemolysin -
  SGW56_RS13590 - 2739636..2740421 (-) 786 WP_000867944.1 carbon-nitrogen family hydrolase -
  SGW56_RS13595 - 2740782..2741408 (-) 627 WP_000522375.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=904277 SGW56_RS13565 WP_000688492.1 2735907..2736623(-) (agrA) [Staphylococcus aureus strain DA70518]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=904277 SGW56_RS13565 WP_000688492.1 2735907..2736623(-) (agrA) [Staphylococcus aureus strain DA70518]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATCAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAGGATGATCCAGCAGAATTAAGAACACGTATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCTGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACTAAGTCACACAGACTCATTGCGCATTTAGACAATCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGCTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATTG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1