Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SGW56_RS05540 Genome accession   NZ_CP138663
Coordinates   1089284..1090270 (-) Length   328 a.a.
NCBI ID   WP_000959271.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70518     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1084284..1095270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW56_RS05515 - 1084544..1084891 (-) 348 WP_001242102.1 hypothetical protein -
  SGW56_RS05520 - 1085077..1085670 (+) 594 WP_000224615.1 CYTH domain-containing protein -
  SGW56_RS05525 - 1085774..1086139 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  SGW56_RS05530 yjbH 1086162..1086968 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  SGW56_RS05535 pepF 1087428..1089236 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  SGW56_RS05540 coiA 1089284..1090270 (-) 987 WP_000959271.1 competence protein CoiA family protein Machinery gene
  SGW56_RS05545 mecA 1090391..1091110 (-) 720 WP_001217728.1 adaptor protein MecA -
  SGW56_RS05550 spxA 1091482..1091877 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  SGW56_RS05555 trpS 1092172..1093161 (+) 990 WP_000448938.1 tryptophan--tRNA ligase -
  SGW56_RS05560 opp4C 1093203..1094084 (-) 882 WP_001180265.1 oligopeptide ABC transporter permease -
  SGW56_RS05565 opp4B 1094096..1095058 (-) 963 WP_000593421.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38849.49 Da        Isoelectric Point: 9.7732

>NTDB_id=904261 SGW56_RS05540 WP_000959271.1 1089284..1090270(-) (coiA) [Staphylococcus aureus strain DA70518]
MLVALNEEKERVLATTALRKIKYFCPVCGKQVILKRGLKVISHFAHKHLTEQKCFNNESFKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSIFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSNR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=904261 SGW56_RS05540 WP_000959271.1 1089284..1090270(-) (coiA) [Staphylococcus aureus strain DA70518]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGATAAAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAACGGAACAAAAAT
GTTTTAATAATGAATCGTTTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAACCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATATTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATACTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAAATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.037

100

0.96
  coiA Staphylococcus aureus MW2

95.732

100

0.957