Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SGW56_RS04790 Genome accession   NZ_CP138663
Coordinates   948813..949271 (-) Length   152 a.a.
NCBI ID   WP_160195134.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70518     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 914757..959573 948813..949271 within 0


Gene organization within MGE regions


Location: 914757..959573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW56_RS04545 - 914757..914942 (-) 186 WP_001286804.1 hypothetical protein -
  SGW56_RS04550 - 914944..915054 (-) 111 WP_000139423.1 hypothetical protein -
  SGW56_RS04555 - 915125..915277 (-) 153 WP_001788502.1 hypothetical protein -
  SGW56_RS04560 - 915520..916965 (-) 1446 WP_338447650.1 SH3 domain-containing protein -
  SGW56_RS04565 - 916946..917383 (-) 438 WP_031773533.1 phage holin -
  SGW56_RS04570 - 917439..917834 (-) 396 WP_000398857.1 hypothetical protein -
  SGW56_RS04575 - 917839..919077 (-) 1239 WP_160195123.1 BppU family phage baseplate upper protein -
  SGW56_RS04580 - 919090..920988 (-) 1899 WP_160195124.1 glucosaminidase domain-containing protein -
  SGW56_RS04585 - 921125..921424 (-) 300 WP_000466777.1 DUF2951 domain-containing protein -
  SGW56_RS04590 - 921465..921638 (-) 174 WP_015990323.1 XkdX family protein -
  SGW56_RS04595 - 921642..922019 (-) 378 WP_000705907.1 DUF2977 domain-containing protein -
  SGW56_RS04600 - 922019..923842 (-) 1824 WP_015967259.1 phage baseplate upper protein -
  SGW56_RS04605 - 923842..925752 (-) 1911 WP_160195125.1 hypothetical protein -
  SGW56_RS04610 - 925767..927668 (-) 1902 WP_000156404.1 SGNH/GDSL hydrolase family protein -
  SGW56_RS04615 - 927677..928624 (-) 948 WP_000350680.1 phage tail family protein -
  SGW56_RS04620 - 928637..932101 (-) 3465 WP_338447651.1 hypothetical protein -
  SGW56_RS04625 - 932118..932462 (-) 345 WP_000105584.1 hypothetical protein -
  SGW56_RS04630 - 932492..932857 (-) 366 WP_001100161.1 tail assembly chaperone -
  SGW56_RS04635 - 932919..933500 (-) 582 WP_338447652.1 phage major tail protein, TP901-1 family -
  SGW56_RS04640 - 933519..933902 (-) 384 WP_031925466.1 hypothetical protein -
  SGW56_RS04645 - 933914..934261 (-) 348 WP_001017815.1 HK97-gp10 family putative phage morphogenesis protein -
  SGW56_RS04650 - 934261..934563 (-) 303 WP_031923905.1 hypothetical protein -
  SGW56_RS04655 - 934560..934892 (-) 333 WP_094623572.1 phage head-tail connector protein -
  SGW56_RS04660 - 934901..935188 (-) 288 WP_050957630.1 hypothetical protein -
  SGW56_RS04665 - 935210..936184 (-) 975 WP_031790978.1 phage major capsid protein -
  SGW56_RS04670 - 936198..936812 (-) 615 WP_259353508.1 DUF4355 domain-containing protein -
  SGW56_RS04675 - 937035..937115 (-) 81 Protein_892 hypothetical protein -
  SGW56_RS04680 - 937197..938192 (-) 996 WP_259353509.1 minor capsid protein -
  SGW56_RS04685 - 938199..939734 (-) 1536 WP_031764175.1 phage portal protein -
  SGW56_RS04690 - 939745..941022 (-) 1278 WP_031769002.1 PBSX family phage terminase large subunit -
  SGW56_RS04695 - 941009..941449 (-) 441 WP_001003271.1 terminase small subunit -
  SGW56_RS04700 - 941635..942054 (-) 420 WP_000058632.1 transcriptional regulator -
  SGW56_RS04705 - 942069..942215 (-) 147 WP_160195129.1 hypothetical protein -
  SGW56_RS04710 - 942216..942389 (-) 174 WP_025174872.1 transcriptional activator RinB -
  SGW56_RS04715 - 942392..942592 (-) 201 WP_160195130.1 hypothetical protein -
  SGW56_RS04720 - 942567..942755 (-) 189 WP_160195131.1 DUF1381 domain-containing protein -
  SGW56_RS04725 - 942792..943322 (-) 531 WP_000185706.1 dUTPase -
  SGW56_RS04730 - 943315..943563 (-) 249 WP_001065068.1 DUF1024 family protein -
  SGW56_RS04735 - 943556..943927 (-) 372 WP_001557190.1 hypothetical protein -
  SGW56_RS04740 - 943936..944178 (-) 243 WP_001562543.1 SAV1978 family virulence-associated passenger protein -
  SGW56_RS04745 - 944182..944796 (-) 615 WP_338447653.1 SA1788 family PVL leukocidin-associated protein -
  SGW56_RS04750 - 944797..944982 (-) 186 WP_001187266.1 DUF3113 family protein -
  SGW56_RS04755 - 944987..945391 (-) 405 WP_000049789.1 DUF1064 domain-containing protein -
  SGW56_RS04760 - 945401..945622 (-) 222 WP_001123673.1 DUF3269 family protein -
  SGW56_RS04765 - 945635..945793 (-) 159 WP_000256589.1 hypothetical protein -
  SGW56_RS04770 - 945787..946566 (-) 780 WP_000803070.1 ATP-binding protein -
  SGW56_RS04775 - 946576..947379 (-) 804 WP_000504982.1 phage replisome organizer N-terminal domain-containing protein -
  SGW56_RS04780 - 947351..948133 (-) 783 WP_000240897.1 AP2 domain-containing protein -
  SGW56_RS04785 - 948133..948801 (-) 669 Protein_914 putative HNHc nuclease -
  SGW56_RS04790 ssbA 948813..949271 (-) 459 WP_160195134.1 single-stranded DNA-binding protein Machinery gene
  SGW56_RS04795 - 949271..949894 (-) 624 WP_217768227.1 DUF1071 domain-containing protein -
  SGW56_RS04800 - 949887..950108 (-) 222 WP_000815401.1 DUF2483 family protein -
  SGW56_RS04805 - 950118..950378 (-) 261 WP_031874257.1 DUF1108 family protein -
  SGW56_RS04810 - 950383..950685 (-) 303 WP_000165363.1 DUF2482 family protein -
  SGW56_RS04815 - 950778..950939 (-) 162 WP_001285954.1 DUF1270 domain-containing protein -
  SGW56_RS04820 - 951119..951349 (+) 231 WP_000395457.1 hypothetical protein -
  SGW56_RS04825 - 951553..951747 (-) 195 WP_000390105.1 hypothetical protein -
  SGW56_RS04830 - 951764..952528 (-) 765 Protein_923 phage antirepressor -
  SGW56_RS04835 - 952605..952817 (-) 213 WP_000132644.1 helix-turn-helix transcriptional regulator -
  SGW56_RS04840 - 952970..953284 (+) 315 WP_001118607.1 helix-turn-helix transcriptional regulator -
  SGW56_RS04845 - 953306..953764 (+) 459 WP_000521395.1 ImmA/IrrE family metallo-endopeptidase -
  SGW56_RS04850 - 953782..954711 (+) 930 WP_001253415.1 DUF5067 domain-containing protein -
  SGW56_RS04855 - 954769..955554 (+) 786 Protein_928 recombinase family protein -
  SGW56_RS04860 - 955629..956725 (+) 1097 Protein_929 IS3 family transposase -
  SGW56_RS04865 - 956775..957380 (+) 606 Protein_930 recombinase family protein -
  SGW56_RS04870 rpmF 957497..957670 (-) 174 WP_000290472.1 50S ribosomal protein L32 -
  SGW56_RS04875 - 957750..958307 (-) 558 WP_061824058.1 DUF177 domain-containing protein -
  SGW56_RS04880 - 958434..959573 (+) 1140 WP_000843619.1 nucleotidyltransferase -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16997.75 Da        Isoelectric Point: 8.4362

>NTDB_id=904259 SGW56_RS04790 WP_160195134.1 948813..949271(-) (ssbA) [Staphylococcus aureus strain DA70518]
MLNRAVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=904259 SGW56_RS04790 WP_160195134.1 948813..949271(-) (ssbA) [Staphylococcus aureus strain DA70518]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCACACCAAATGGCGTAAATGTAGG
AACATTCACATTAGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCAACAACAGCATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATA
ATCCATTTGCTAATGCTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.209

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

52.941

100

0.592
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

69.737

0.414
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.382
  ssb Neisseria meningitidis MC58

32.759

100

0.375
  ssb Neisseria gonorrhoeae MS11

32.759

100

0.375
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.826

75.658

0.362