Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   L6429_RS04770 Genome accession   NZ_AP025196
Coordinates   914881..916737 (-) Length   618 a.a.
NCBI ID   WP_237021997.1    Uniprot ID   -
Organism   Helicobacter cinaedi strain T36     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 909881..921737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6429_RS04755 (T36_0951) - 911217..911906 (-) 690 WP_237021876.1 response regulator -
  L6429_RS04760 (T36_0952) - 911909..913393 (-) 1485 WP_237021877.1 HAMP domain-containing sensor histidine kinase -
  L6429_RS04765 (T36_0953) - 913403..914884 (-) 1482 WP_237021878.1 hypothetical protein -
  L6429_RS04770 (T36_0954) uvrC 914881..916737 (-) 1857 WP_237021997.1 excinuclease ABC subunit UvrC Machinery gene
  L6429_RS04775 (T36_0955) - 916784..917242 (-) 459 WP_237021879.1 hypothetical protein -
  L6429_RS04780 (T36_0956) - 917234..917482 (+) 249 WP_237021880.1 hypothetical protein -
  L6429_RS04785 (T36_0957) nadB 917483..918928 (+) 1446 WP_237021881.1 L-aspartate oxidase -
  L6429_RS04790 (T36_0958) - 918931..919128 (-) 198 WP_237021882.1 DUF5408 family protein -
  L6429_RS04795 (T36_0959) - 919125..920003 (-) 879 WP_237021883.1 metal ABC transporter permease -
  L6429_RS04800 (T36_0960) - 919934..920956 (-) 1023 WP_237021884.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 71316.93 Da        Isoelectric Point: 9.8099

>NTDB_id=90418 L6429_RS04770 WP_237021997.1 914881..916737(-) (uvrC) [Helicobacter cinaedi strain T36]
MYSLLFTLQNLPTQPGIYQYFDKDDNLLYVGKAKNLKNRIKSYFSIHNDIITPKANLSQRIALMVSQVAKIQTLLTQSQE
DALILENSLIKSLKPKYNILLRDDKTYPYIYIDTSTAFPRFEITRKVLQSKHIEYFGPFVSGARELLDSLYDALPLVQKK
SCLKGKKACIFHQIHKCPAPCENKISQSQYAEYITQAKAFIDDRKGLIEILESKMQILSHNLQFEEAAKIRDRIQKLKTL
KTQSIIDIMSGDYDIFLLDSQKQDMGQNHILMMLFIRNGRIVSSDFSFIHQEIHSQNLASLYTQALLNHYKTPLPLPPKE
ILIPHFDFQDKDDLQKILQAQTQSHLKITQPQKGTKYNLLQLAKKNAQEILTLHTKEQNNAQNENTTLYALKDLCNLSQV
PYRIEVFDTSHHSGSHNVGGMVVYENGEFIRSAYRRFELHSSDEYSQMSEMLTRRAKKFESNPPPDLWLLDGGKAQINLA
LDILKSVGANVDIIAIAKMKYGEKHNAKAYRAKGNALDILRTQNAEFKLSTNDKRLQFCQKLRDEVHRYAITYHRNKKQK
DIHKIQIQKGNNMDSSYSKAQIKRLLDYFGSFHAIQNAPKEQIENALSRSFKSNKDSK

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=90418 L6429_RS04770 WP_237021997.1 914881..916737(-) (uvrC) [Helicobacter cinaedi strain T36]
ATGTATAGTTTGCTTTTCACCTTACAGAATCTCCCCACACAGCCCGGAATCTACCAATATTTTGATAAAGATGATAATCT
ACTCTATGTCGGCAAGGCTAAAAATCTAAAAAATCGCATAAAAAGCTACTTTTCTATTCATAATGACATTATCACGCCAA
AGGCTAACCTTAGCCAAAGAATAGCTCTTATGGTATCCCAAGTGGCTAAGATTCAGACTTTGCTTACACAAAGCCAAGAA
GATGCTCTTATCCTTGAAAACTCCCTTATCAAAAGCCTAAAGCCAAAGTATAATATTCTTTTGCGTGATGATAAAACTTA
TCCTTATATTTATATTGACACTTCTACTGCTTTTCCACGATTTGAAATCACTCGCAAGGTGCTACAAAGCAAGCATATTG
AGTATTTTGGTCCTTTTGTAAGTGGAGCTAGGGAGCTACTTGATAGCCTCTATGATGCCCTGCCCCTTGTGCAGAAAAAG
TCCTGCCTTAAAGGCAAAAAGGCGTGTATATTTCATCAGATTCATAAATGCCCTGCCCCTTGTGAAAATAAAATCTCTCA
AAGTCAATACGCAGAGTATATTACACAAGCAAAGGCGTTTATAGATGATAGAAAAGGGCTTATAGAGATTTTAGAATCTA
AAATGCAGATACTCTCACACAATCTACAATTTGAAGAGGCAGCAAAGATACGAGATAGAATCCAAAAGCTAAAAACACTC
AAAACCCAATCCATTATTGACATTATGAGCGGAGATTATGATATATTCTTGCTTGATTCACAAAAGCAAGATATGGGGCA
AAATCATATCCTTATGATGCTTTTTATCCGCAATGGACGCATTGTCTCAAGTGATTTTTCATTTATCCACCAAGAGATTC
ACAGCCAAAACCTAGCTTCACTCTACACCCAAGCCTTACTTAATCACTATAAAACCCCACTTCCCCTGCCGCCAAAGGAG
ATTCTTATCCCACATTTTGACTTCCAAGATAAAGATGATTTACAAAAGATTTTACAAGCCCAAACACAAAGTCATCTCAA
AATCACCCAGCCACAAAAAGGCACAAAATATAACCTTTTGCAACTTGCCAAAAAGAACGCTCAAGAAATCCTAACTTTGC
ATACCAAAGAGCAAAATAACGCCCAAAATGAAAACACCACTTTATACGCTCTAAAAGATCTATGCAATCTCTCTCAAGTG
CCTTATAGGATAGAAGTCTTTGACACCTCTCATCATAGCGGAAGCCACAATGTAGGCGGAATGGTGGTGTATGAAAATGG
CGAGTTTATCCGCAGTGCTTACAGACGCTTTGAGCTTCATAGCAGTGATGAATACTCCCAAATGAGCGAAATGCTAACAC
GCAGGGCAAAAAAATTTGAATCTAATCCGCCGCCAGATTTATGGCTGCTTGATGGGGGCAAGGCTCAAATCAACCTAGCA
CTTGACATTCTAAAAAGCGTGGGGGCAAATGTGGATATTATCGCCATTGCCAAAATGAAATATGGGGAGAAACACAATGC
TAAAGCCTATCGCGCTAAAGGCAATGCACTTGATATTTTACGCACACAAAATGCGGAGTTTAAACTTAGCACAAACGATA
AAAGACTACAATTCTGCCAAAAGCTCCGCGATGAAGTGCATAGATATGCCATCACTTATCATCGCAACAAAAAGCAAAAA
GACATACACAAGATTCAGATTCAAAAGGGAAACAATATGGATAGCTCTTATAGCAAGGCTCAAATTAAACGACTTTTAGA
TTATTTTGGCTCGTTCCACGCCATTCAAAACGCTCCAAAAGAGCAGATAGAAAATGCTCTTTCACGCTCTTTTAAAAGTA
ATAAAGATTCAAAATGA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(207-239)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(393-551)

GIY-YIG catalytic domain (GIY-YIG)

(15-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.658

98.382

0.498

Multiple sequence alignment