Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SGW65_RS07555 Genome accession   NZ_CP138661
Coordinates   1568598..1569044 (-) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70870     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1563598..1574044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW65_RS07525 gcvPA 1564524..1565870 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SGW65_RS07530 gcvT 1565890..1566981 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  SGW65_RS07535 - 1567140..1567664 (-) 525 WP_001015117.1 shikimate kinase -
  SGW65_RS07540 - 1567654..1567800 (-) 147 WP_001789879.1 hypothetical protein -
  SGW65_RS07545 comGF 1567897..1568394 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  SGW65_RS07550 comGE 1568312..1568611 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  SGW65_RS07555 comGD 1568598..1569044 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  SGW65_RS07560 comGC 1569022..1569333 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SGW65_RS07565 comGB 1569347..1570417 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  SGW65_RS07570 comGA 1570389..1571363 (-) 975 WP_338427508.1 competence type IV pilus ATPase ComGA Machinery gene
  SGW65_RS07575 - 1571415..1572038 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SGW65_RS07580 - 1572035..1572364 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SGW65_RS07585 - 1572364..1573350 (-) 987 WP_000161314.1 ROK family glucokinase -
  SGW65_RS07590 - 1573347..1573550 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=904172 SGW65_RS07555 WP_001790850.1 1568598..1569044(-) (comGD) [Staphylococcus aureus strain DA70870]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=904172 SGW65_RS07555 WP_001790850.1 1568598..1569044(-) (comGD) [Staphylococcus aureus strain DA70870]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993