Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   Cthiooxydans_RS21315 Genome accession   NZ_AP025193
Coordinates   4624367..4624771 (-) Length   134 a.a.
NCBI ID   WP_229227576.1    Uniprot ID   -
Organism   Comamonas thiooxydans strain NR4028     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4619367..4629771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cthiooxydans_RS21300 (Cthiooxydans_41530) - 4621199..4623442 (-) 2244 WP_012839727.1 methyl-accepting chemotaxis protein -
  Cthiooxydans_RS21305 (Cthiooxydans_41540) - 4623462..4623989 (-) 528 WP_003071161.1 chemotaxis protein CheW -
  Cthiooxydans_RS21310 (Cthiooxydans_41550) - 4624005..4624367 (-) 363 WP_003071159.1 response regulator -
  Cthiooxydans_RS21315 (Cthiooxydans_41560) pilG 4624367..4624771 (-) 405 WP_229227576.1 response regulator Regulator
  Cthiooxydans_RS21320 - 4624822..4624974 (-) 153 WP_034399566.1 rubredoxin -
  Cthiooxydans_RS21325 (Cthiooxydans_41570) thiD 4625090..4626058 (+) 969 WP_059440724.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Cthiooxydans_RS21330 (Cthiooxydans_41580) hemL 4626042..4627346 (+) 1305 WP_003071150.1 glutamate-1-semialdehyde 2,1-aminomutase -
  Cthiooxydans_RS21335 (Cthiooxydans_41590) - 4627509..4629281 (+) 1773 WP_229227577.1 alkaline phosphatase D family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14653.87 Da        Isoelectric Point: 6.9230

>NTDB_id=90407 Cthiooxydans_RS21315 WP_229227576.1 4624367..4624771(-) (pilG) [Comamonas thiooxydans strain NR4028]
MTASGAPLRVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
NTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFSKDQLLQAVQQFALQAADVGAA

Nucleotide


Download         Length: 405 bp        

>NTDB_id=90407 Cthiooxydans_RS21315 WP_229227576.1 4624367..4624771(-) (pilG) [Comamonas thiooxydans strain NR4028]
GTGACAGCATCTGGTGCGCCTTTGCGCGTTCTGGTCGTGGATGACAGCAACACCATCCGCCGCAGCGCTGAAATTTTCCT
CAAGCAAGGTGGTCACGAAGTTCTTCTTGCCGACGATGGCTTCGATGCCCTGTCCAAGGTCAATGACTACCAGCCCCAGC
TCATCTTCTGCGACATTCTGATGCCCAAACTCGATGGCTATCAGACCTGCGCCATCATCAAGCGCAATGCTCGCTTTGCC
AATACGCCCGTCGTGATGCTGTCATCCAAGGACGGCGTATTCGACAAGGCTCGCGGTCGCATGGTGGGCTGCCAGGACTA
TCTGACCAAACCGTTTTCCAAAGATCAATTGCTGCAAGCCGTACAACAATTCGCGCTGCAAGCTGCAGATGTGGGAGCTG
CATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

59.483

86.567

0.515

Multiple sequence alignment