Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ABKA22_RS10560 Genome accession   NZ_CP157287
Coordinates   2104440..2105210 (-) Length   256 a.a.
NCBI ID   WP_004254655.1    Uniprot ID   Q9CE51
Organism   Lactococcus lactis strain BIM B-1834     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2099440..2110210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA22_RS10530 (ABKA22_10530) - 2100071..2100238 (-) 168 WP_004254670.1 hypothetical protein -
  ABKA22_RS10535 (ABKA22_10535) - 2100375..2101298 (-) 924 WP_004254664.1 peptidase U32 family protein -
  ABKA22_RS10540 (ABKA22_10540) - 2101519..2101800 (+) 282 WP_004254660.1 DUF3270 domain-containing protein -
  ABKA22_RS10545 (ABKA22_10545) - 2101823..2102644 (-) 822 WP_251906076.1 putative RNA methyltransferase -
  ABKA22_RS10550 (ABKA22_10550) - 2102762..2103388 (+) 627 WP_004254657.1 copper homeostasis protein CutC -
  ABKA22_RS10555 (ABKA22_10555) - 2103428..2104447 (-) 1020 WP_004254656.1 ABC transporter permease -
  ABKA22_RS10560 (ABKA22_10560) pptA 2104440..2105210 (-) 771 WP_004254655.1 ABC transporter ATP-binding protein Regulator
  ABKA22_RS10565 (ABKA22_10565) - 2105229..2107034 (-) 1806 WP_251906077.1 glycerophosphodiester phosphodiesterase -
  ABKA22_RS10570 (ABKA22_10570) - 2107313..2107714 (+) 402 WP_004254651.1 HIT family protein -
  ABKA22_RS10575 (ABKA22_10575) - 2107727..2107948 (+) 222 WP_010906257.1 hypothetical protein -
  ABKA22_RS10580 (ABKA22_10580) - 2107960..2108304 (-) 345 WP_143459355.1 hypothetical protein -
  ABKA22_RS10585 (ABKA22_10585) rplA 2108383..2109072 (-) 690 WP_004254644.1 50S ribosomal protein L1 -
  ABKA22_RS10590 (ABKA22_10590) rplK 2109368..2109793 (-) 426 WP_004254643.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28472.99 Da        Isoelectric Point: 4.5320

>NTDB_id=904044 ABKA22_RS10560 WP_004254655.1 2104440..2105210(-) (pptA) [Lactococcus lactis strain BIM B-1834]
MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLIGLNGAGKSTTIQEIIGLLTPYSGQIELDGLTLQQDLEGYRRKIGFIP
ETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPF
MGLDPLAIQDLIDLMIDMKKSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTKG
NIPNSKEVVEAGKSNE

Nucleotide


Download         Length: 771 bp        

>NTDB_id=904044 ABKA22_RS10560 WP_004254655.1 2104440..2105210(-) (pptA) [Lactococcus lactis strain BIM B-1834]
ATGTTAAAAGTAACAAATCTAACAGGTGGCTATTTGGGGCATCCTGTCTTAAAAGACCTTAATTTTGAAATTAAAGAAGG
AGAGTTAGTTGGACTCATTGGTTTAAATGGTGCAGGAAAATCGACGACAATTCAAGAAATTATTGGACTTTTGACTCCTT
ATTCTGGACAAATTGAATTAGACGGCTTAACTTTACAACAAGATTTAGAAGGCTATCGTAGAAAAATTGGTTTCATTCCA
GAAACACCAAGTTTGTATGAAGAATTGACTTTGCGTGAACATATTGAAGTGACAGCTTTAGCTTACGGGATTTCTGTTGA
CTTGGCTTTTGAACGTGCTGAAAAATTATTAGAAACTTTCCGCTTGAGTGATAAATTAGATTGGTTCCCTGTGAATTTTT
CAAAAGGGATGAAACAAAAAGTGATGATTATCTGCGCATTCTTAGTGGAACCTTCGCTCTATATTGTTGATGAACCTTTT
ATGGGACTTGATCCGCTTGCGATTCAGGATTTGATTGACTTGATGATTGACATGAAAAAATCAGGAAGTTCGATTTTAAT
GAGTACACATATCTTGTCCACAGCTGAAAAATTCTGTGATAAATTTATTGTTTTGCATGAAGGTCAAGTTGTTGCTTTTG
GAACAGTAGAAGAATTACGGACTCAATTTAATCAGCCTAAGGCAAGTTTAGATGAAATTTATCTTGCCTTAACAAAAGGA
AATATTCCAAACTCTAAAGAAGTTGTAGAGGCAGGAAAGTCAAATGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CE51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

67.355

94.531

0.637
  pptA Streptococcus thermophilus LMD-9

66.942

94.531

0.633