Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ABKA22_RS06240 Genome accession   NZ_CP157287
Coordinates   1249463..1250533 (-) Length   356 a.a.
NCBI ID   WP_251906455.1    Uniprot ID   -
Organism   Lactococcus lactis strain BIM B-1834     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1244463..1255533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA22_RS06225 (ABKA22_06225) dprA 1244765..1245610 (+) 846 Protein_1202 DNA-processing protein DprA -
  ABKA22_RS06230 (ABKA22_06230) topA 1245871..1248003 (+) 2133 WP_003131148.1 type I DNA topoisomerase -
  ABKA22_RS06235 (ABKA22_06235) trmFO 1248075..1249418 (+) 1344 WP_003131150.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ABKA22_RS06240 (ABKA22_06240) xerS 1249463..1250533 (-) 1071 WP_251906455.1 tyrosine recombinase XerS Machinery gene
  ABKA22_RS06245 (ABKA22_06245) - 1251125..1251739 (-) 615 Protein_1206 tyrosine-type recombinase/integrase -
  ABKA22_RS06250 (ABKA22_06250) - 1252926..1254683 (+) 1758 WP_014570605.1 CocE/NonD family hydrolase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41411.24 Da        Isoelectric Point: 9.6568

>NTDB_id=904017 ABKA22_RS06240 WP_251906455.1 1249463..1250533(-) (xerS) [Lactococcus lactis strain BIM B-1834]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEIENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=904017 ABKA22_RS06240 WP_251906455.1 1249463..1250533(-) (xerS) [Lactococcus lactis strain BIM B-1834]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACACATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCTCTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGATTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATATGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATTGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTAACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACGGCATTTTTTGTGACACTTTATAGAGACGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTGCGAGTGACCCCTCACAAGCTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGCAATCAGTTAGGGCATGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAACAAAAAAATGCTCTAGATAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

76.404

100

0.764