Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABKA22_RS00210 Genome accession   NZ_CP157287
Coordinates   40110..40865 (+) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis strain BIM B-1834     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 35110..45865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA22_RS00180 (ABKA22_00180) - 35170..35619 (+) 450 WP_023189465.1 GNAT family N-acetyltransferase -
  ABKA22_RS00185 (ABKA22_00185) - 35696..35938 (+) 243 WP_023189466.1 TM2 domain-containing protein -
  ABKA22_RS00190 (ABKA22_00190) - 36012..37640 (-) 1629 WP_348619074.1 SulP family inorganic anion transporter -
  ABKA22_RS00195 (ABKA22_00195) - 37850..38371 (+) 522 WP_021723185.1 N-acetyltransferase -
  ABKA22_RS00205 (ABKA22_00205) - 38836..40011 (+) 1176 WP_012896922.1 pyridoxal phosphate-dependent aminotransferase -
  ABKA22_RS00210 (ABKA22_00210) recO 40110..40865 (+) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  ABKA22_RS00215 (ABKA22_00215) - 40979..41152 (+) 174 WP_021214949.1 helix-turn-helix transcriptional regulator -
  ABKA22_RS00220 (ABKA22_00220) lpdA 41223..42641 (-) 1419 WP_023189469.1 dihydrolipoyl dehydrogenase -
  ABKA22_RS00225 (ABKA22_00225) - 42835..44424 (-) 1590 WP_251906196.1 2-oxo acid dehydrogenase subunit E2 -
  ABKA22_RS00230 (ABKA22_00230) - 44417..45397 (-) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=903984 ABKA22_RS00210 WP_003132217.1 40110..40865(+) (recO) [Lactococcus lactis strain BIM B-1834]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=903984 ABKA22_RS00210 WP_003132217.1 40110..40865(+) (recO) [Lactococcus lactis strain BIM B-1834]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAAATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATAATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTATATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534