Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABH274_RS15545 Genome accession   NZ_CP157262
Coordinates   3181427..3182056 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0H2V5S2
Organism   Escherichia coli strain GABEEC132     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3176427..3187056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH274_RS15530 (ABH274_15530) helD 3176669..3178723 (-) 2055 WP_001443200.1 DNA helicase IV -
  ABH274_RS15535 (ABH274_15535) yccF 3178846..3179292 (+) 447 WP_001261236.1 YccF domain-containing protein -
  ABH274_RS15540 (ABH274_15540) yccS 3179302..3181464 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABH274_RS15545 (ABH274_15545) sxy/tfoX 3181427..3182056 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABH274_RS15550 (ABH274_15550) sulA 3182275..3182784 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABH274_RS15555 (ABH274_15555) ompA 3183140..3184192 (+) 1053 WP_001528868.1 porin OmpA -
  ABH274_RS15560 (ABH274_15560) matP 3184270..3184722 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABH274_RS15565 (ABH274_15565) ycbZ 3184908..3186668 (+) 1761 WP_000156504.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=903941 ABH274_RS15545 WP_000839136.1 3181427..3182056(-) (sxy/tfoX) [Escherichia coli strain GABEEC132]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=903941 ABH274_RS15545 WP_000839136.1 3181427..3182056(-) (sxy/tfoX) [Escherichia coli strain GABEEC132]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V5S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99