Detailed information NTG0903916

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABH274_RS05630
• Genome accession: NZ_CP157262
• Coordinates: 1168101..1169093 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GABEEC132
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1163101..1174093

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABH274_RS05600 (ABH274_05600)	ispD	1163162..1163872 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABH274_RS05605 (ABH274_05605)	ispF	1163872..1164351 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABH274_RS05610 (ABH274_05610)	truD	1164348..1165397 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
ABH274_RS05615 (ABH274_05615)	surE	1165378..1166139 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABH274_RS05620 (ABH274_05620)	pcm	1166133..1166759 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
ABH274_RS05625 (ABH274_05625)	nlpD	1166944..1168038 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
ABH274_RS05630 (ABH274_05630)	rpoS	1168101..1169093 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABH274_RS05635 (ABH274_05635)	-	1169271..1169822 (-)	552	WP_001179443.1	flavodoxin family protein	-
ABH274_RS05640 (ABH274_05640)	-	1170047..1171090 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
ABH274_RS05645 (ABH274_05645)	ygbN	1171233..1172597 (-)	1365	WP_000104433.1	GntP family transporter	-
ABH274_RS05650 (ABH274_05650)	ygbM	1172686..1173462 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=903916 ABH274_RS05630 WP_000081550.1 1168101..1169093(+) (rpoS) [Escherichia coli strain GABEEC132]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=903916 ABH274_RS05630 WP_000081550.1 1168101..1169093(+) (rpoS) [Escherichia coli strain GABEEC132]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715