Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   SBP12_RS17145 Genome accession   NZ_CP138634
Coordinates   3465027..3465716 (-) Length   229 a.a.
NCBI ID   WP_197061611.1    Uniprot ID   -
Organism   Bacillus velezensis strain A5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3460027..3470716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBP12_RS17110 (SBP12_17110) fliW 3460117..3460548 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  SBP12_RS17115 (SBP12_17115) - 3460578..3461147 (-) 570 WP_039253655.1 DUF6470 family protein -
  SBP12_RS17120 (SBP12_17120) flgL 3461239..3462156 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  SBP12_RS17125 (SBP12_17125) flgK 3462168..3463685 (-) 1518 WP_039253652.1 flagellar hook-associated protein FlgK -
  SBP12_RS17130 (SBP12_17130) - 3463701..3464183 (-) 483 WP_039253650.1 flagellar protein FlgN -
  SBP12_RS17135 (SBP12_17135) flgM 3464198..3464464 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SBP12_RS17140 (SBP12_17140) - 3464534..3464953 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  SBP12_RS17145 (SBP12_17145) comFC 3465027..3465716 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  SBP12_RS17150 (SBP12_17150) - 3465722..3466006 (-) 285 WP_039253645.1 late competence development ComFB family protein -
  SBP12_RS17155 (SBP12_17155) comFA 3466064..3467449 (-) 1386 WP_039253641.1 DEAD/DEAH box helicase Machinery gene
  SBP12_RS17160 (SBP12_17160) - 3467557..3468405 (-) 849 WP_015418336.1 DegV family protein -
  SBP12_RS17165 (SBP12_17165) degU 3468503..3469192 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SBP12_RS17170 (SBP12_17170) degS 3469269..3470432 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25229.83 Da        Isoelectric Point: 8.0779

>NTDB_id=903875 SBP12_RS17145 WP_197061611.1 3465027..3465716(-) (comFC) [Bacillus velezensis strain A5]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=903875 SBP12_RS17145 WP_197061611.1 3465027..3465716(-) (comFC) [Bacillus velezensis strain A5]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCTGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594