Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   SBP12_RS05305 Genome accession   NZ_CP138634
Coordinates   1014954..1015532 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain A5     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1009954..1020532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBP12_RS19865 - 1010456..1010971 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  SBP12_RS19870 - 1011263..1011850 (-) 588 Protein_975 protoglobin domain-containing protein -
  SBP12_RS05290 (SBP12_05290) - 1011869..1013392 (-) 1524 WP_039252087.1 FAD-dependent oxidoreductase -
  SBP12_RS05295 (SBP12_05295) - 1013517..1014374 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  SBP12_RS05300 (SBP12_05300) - 1014405..1014638 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  SBP12_RS05305 (SBP12_05305) comK 1014954..1015532 (+) 579 WP_003155179.1 competence protein ComK Regulator
  SBP12_RS05310 (SBP12_05310) - 1015678..1016046 (+) 369 WP_012117235.1 iron chaperone -
  SBP12_RS05315 (SBP12_05315) - 1016073..1016444 (+) 372 WP_039252083.1 iron chaperone -
  SBP12_RS05320 (SBP12_05320) - 1016567..1017076 (+) 510 Protein_982 MepB family protein -
  SBP12_RS05325 (SBP12_05325) - 1017296..1018006 (-) 711 WP_039252080.1 YrpD family protein -
  SBP12_RS05330 (SBP12_05330) - 1018202..1018472 (+) 271 Protein_984 excalibur calcium-binding domain-containing protein -
  SBP12_RS05335 (SBP12_05335) - 1018504..1018821 (-) 318 WP_003155166.1 YbjQ family protein -
  SBP12_RS05340 (SBP12_05340) - 1018863..1020332 (-) 1470 WP_039252077.1 sodium:solute symporter -
  SBP12_RS05345 (SBP12_05345) - 1020329..1020529 (-) 201 WP_007409181.1 DUF3311 domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=903831 SBP12_RS05305 WP_003155179.1 1014954..1015532(+) (comK) [Bacillus velezensis strain A5]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=903831 SBP12_RS05305 WP_003155179.1 1014954..1015532(+) (comK) [Bacillus velezensis strain A5]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCTAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGTATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823