Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SBP12_RS02000 Genome accession   NZ_CP138634
Coordinates   395129..396082 (+) Length   317 a.a.
NCBI ID   WP_015239156.1    Uniprot ID   A0AAP3YGS2
Organism   Bacillus velezensis strain A5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 390129..401082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBP12_RS01975 (SBP12_01975) - 390186..391619 (+) 1434 WP_162303988.1 HAMP domain-containing sensor histidine kinase -
  SBP12_RS01980 (SBP12_01980) rapC 391761..392909 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  SBP12_RS01985 (SBP12_01985) phrC 392893..393012 (+) 120 WP_031378677.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  SBP12_RS01990 (SBP12_01990) - 393161..393271 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  SBP12_RS01995 (SBP12_01995) - 393351..394715 (-) 1365 WP_039252794.1 aspartate kinase -
  SBP12_RS02000 (SBP12_02000) ceuB 395129..396082 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  SBP12_RS02005 (SBP12_02005) - 396072..397019 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  SBP12_RS02010 (SBP12_02010) - 397013..397771 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  SBP12_RS02015 (SBP12_02015) - 397793..398737 (+) 945 WP_007410275.1 siderophore ABC transporter substrate-binding protein -
  SBP12_RS02020 (SBP12_02020) - 398779..400203 (-) 1425 WP_039252789.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=903824 SBP12_RS02000 WP_015239156.1 395129..396082(+) (ceuB) [Bacillus velezensis strain A5]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=903824 SBP12_RS02000 WP_015239156.1 395129..396082(+) (ceuB) [Bacillus velezensis strain A5]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGGAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATTGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGGTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACTTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536