Detailed information NTG0903777

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: SD459_RS18750
• Genome accession: NZ_CP138627
• Coordinates: 3700503..3701648 (+)
• Length: 381 a.a.
• NCBI ID: WP_079891436.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain AYGS-17
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3695503..3706648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SD459_RS18730 (SD459_18725)	fnr	3695977..3696693 (-)	717	WP_017418713.1	fumarate/nitrate reduction transcriptional regulator Fnr	-
SD459_RS18735 (SD459_18730)	narK	3696791..3697981 (-)	1191	WP_017418712.1	nitrate transporter NarK	-
SD459_RS18740 (SD459_18735)	argS	3698116..3699786 (-)	1671	WP_025649385.1	arginine--tRNA ligase	-
SD459_RS18745 (SD459_18740)	-	3699783..3700211 (-)	429	WP_014419128.1	DUF1934 domain-containing protein	-
SD459_RS18750 (SD459_18745)	rapF	3700503..3701648 (+)	1146	WP_079891436.1	Rap family tetratricopeptide repeat protein	Regulator
SD459_RS18755 (SD459_18750)	-	3701632..3701751 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
SD459_RS18760 (SD459_18755)	speB	3701874..3702746 (-)	873	WP_003151054.1	agmatinase	-
SD459_RS18765 (SD459_18760)	speE	3702806..3703636 (-)	831	WP_017418706.1	spermidine synthase	-
SD459_RS18770 (SD459_18765)	-	3703836..3705908 (+)	2073	WP_017418705.1	transglycosylase domain-containing protein	-
SD459_RS18775 (SD459_18770)	-	3705933..3706364 (-)	432	WP_017418704.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45816.31 Da
• Isoelectric Point: 5.0722

>NTDB_id=903777 SD459_RS18750 WP_079891436.1 3700503..3701648(+) (rapF) [Bacillus velezensis strain AYGS-17]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYFIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=903777 SD459_RS18750 WP_079891436.1 3700503..3701648(+) (rapF) [Bacillus velezensis strain AYGS-17]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTCATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.341	100	0.703
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533