Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   SD459_RS13845 Genome accession   NZ_CP138627
Coordinates   2755264..2756016 (-) Length   250 a.a.
NCBI ID   WP_063636761.1    Uniprot ID   A0A7W4LWP0
Organism   Bacillus velezensis strain AYGS-17     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2750264..2761016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD459_RS13820 (SD459_13815) mreC 2750700..2751563 (-) 864 WP_016938781.1 rod shape-determining protein MreC -
  SD459_RS13825 (SD459_13820) mreB 2751594..2752607 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  SD459_RS13830 (SD459_13825) radC 2752699..2753394 (-) 696 WP_007408165.1 DNA repair protein RadC -
  SD459_RS13835 (SD459_13830) - 2753426..2753995 (-) 570 WP_012118105.1 nucleoside triphosphate pyrophosphatase -
  SD459_RS13840 (SD459_13835) - 2754136..2755137 (-) 1002 WP_063636760.1 SPOR domain-containing protein -
  SD459_RS13845 (SD459_13840) comC 2755264..2756016 (-) 753 WP_063636761.1 A24 family peptidase Machinery gene
  SD459_RS13850 (SD459_13845) - 2756157..2757449 (-) 1293 WP_017418285.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  SD459_RS13855 (SD459_13850) - 2757508..2760150 (-) 2643 WP_017418286.1 valine--tRNA ligase -
  SD459_RS13860 (SD459_13855) - 2760603..2760794 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27160.87 Da        Isoelectric Point: 9.2521

>NTDB_id=903759 SD459_RS13845 WP_063636761.1 2755264..2756016(-) (comC) [Bacillus velezensis strain AYGS-17]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=903759 SD459_RS13845 WP_063636761.1 2755264..2756016(-) (comC) [Bacillus velezensis strain AYGS-17]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGTCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4LWP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

57.661

99.2

0.572