Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   SD459_RS07360 Genome accession   NZ_CP138627
Coordinates   1410683..1411147 (-) Length   154 a.a.
NCBI ID   WP_319444686.1    Uniprot ID   -
Organism   Bacillus velezensis strain AYGS-17     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1405683..1416147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD459_RS07340 (SD459_07335) - 1406163..1407983 (+) 1821 WP_063636604.1 PAS domain-containing protein -
  SD459_RS07345 (SD459_07340) - 1407959..1409178 (-) 1220 Protein_1390 aminotransferase A -
  SD459_RS07350 (SD459_07345) - 1409379..1409540 (-) 162 WP_007409608.1 hypothetical protein -
  SD459_RS07355 (SD459_07350) cheV 1409729..1410640 (+) 912 WP_025649511.1 chemotaxis protein CheV -
  SD459_RS07360 (SD459_07355) kre 1410683..1411147 (-) 465 WP_319444686.1 YkyB family protein Regulator
  SD459_RS07365 (SD459_07360) - 1411270..1412562 (-) 1293 WP_014417606.1 MFS transporter -
  SD459_RS07370 (SD459_07365) - 1412638..1413132 (-) 495 WP_088056573.1 L,D-transpeptidase family protein -
  SD459_RS07375 (SD459_07370) - 1413207..1414070 (-) 864 WP_022553417.1 metallophosphoesterase -
  SD459_RS07380 (SD459_07375) fadH 1414214..1414978 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  SD459_RS07385 (SD459_07380) - 1415092..1415640 (+) 549 WP_017417677.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17793.56 Da        Isoelectric Point: 10.4864

>NTDB_id=903733 SD459_RS07360 WP_319444686.1 1410683..1411147(-) (kre) [Bacillus velezensis strain AYGS-17]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLHKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=903733 SD459_RS07360 WP_319444686.1 1410683..1411147(-) (kre) [Bacillus velezensis strain AYGS-17]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCATAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.208

100

0.922