Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   SD459_RS01790 Genome accession   NZ_CP138627
Coordinates   336812..337249 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain AYGS-17     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 331812..342249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD459_RS01765 (SD459_01765) - 332832..333968 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  SD459_RS01770 (SD459_01770) - 333983..334417 (+) 435 WP_014416871.1 RDD family protein -
  SD459_RS01775 (SD459_01775) - 334534..334812 (+) 279 WP_263612330.1 YckD family protein -
  SD459_RS01780 (SD459_01780) - 334916..336352 (+) 1437 WP_063636907.1 glycoside hydrolase family 1 protein -
  SD459_RS01785 (SD459_01785) nin/comJ 336393..336791 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  SD459_RS01790 (SD459_01790) nucA/comI 336812..337249 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  SD459_RS01795 (SD459_01795) hxlB 337580..338137 (-) 558 WP_025650327.1 6-phospho-3-hexuloisomerase -
  SD459_RS01800 (SD459_01800) hxlA 338134..338769 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  SD459_RS01805 (SD459_01805) - 339001..339363 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=903712 SD459_RS01790 WP_003156588.1 336812..337249(-) (nucA/comI) [Bacillus velezensis strain AYGS-17]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=903712 SD459_RS01790 WP_003156588.1 336812..337249(-) (nucA/comI) [Bacillus velezensis strain AYGS-17]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641