Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   SCI76_RS24155 Genome accession   NZ_CP138621
Coordinates   4669053..4669424 (-) Length   123 a.a.
NCBI ID   WP_372454473.1    Uniprot ID   -
Organism   Priestia sp. HNGD-A6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4664053..4674424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI76_RS24125 - 4664342..4664827 (+) 486 WP_033580500.1 hypothetical protein -
  SCI76_RS24130 - 4664958..4665503 (-) 546 WP_048019606.1 GNAT family N-acetyltransferase -
  SCI76_RS24135 - 4665800..4667080 (+) 1281 WP_240962097.1 glycosyltransferase -
  SCI76_RS24140 - 4667103..4667759 (+) 657 WP_048019653.1 TetR/AcrR family transcriptional regulator -
  SCI76_RS24145 - 4667912..4668505 (+) 594 WP_028414498.1 hypothetical protein -
  SCI76_RS24150 - 4668545..4668889 (-) 345 WP_407544584.1 DUF1516 family protein -
  SCI76_RS24155 nucA/comI 4669053..4669424 (-) 372 WP_372454473.1 DNA-entry nuclease Machinery gene
  SCI76_RS24160 - 4669616..4670080 (-) 465 WP_407544586.1 FixH family protein -
  SCI76_RS24165 - 4670110..4671489 (-) 1380 WP_168761021.1 PepSY domain-containing protein -
  SCI76_RS24170 - 4671624..4672265 (-) 642 WP_033580507.1 response regulator transcription factor -
  SCI76_RS24175 - 4672266..4673087 (-) 822 WP_028414492.1 sensor histidine kinase -
  SCI76_RS24180 - 4673290..4674123 (+) 834 WP_168761020.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13533.79 Da        Isoelectric Point: 4.3246

>NTDB_id=903701 SCI76_RS24155 WP_372454473.1 4669053..4669424(-) (nucA/comI) [Priestia sp. HNGD-A6]
MIEGNPLEQNSSTNPSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLKGIPTKSGYDRDEFPMAF
CEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 372 bp        

>NTDB_id=903701 SCI76_RS24155 WP_372454473.1 4669053..4669424(-) (nucA/comI) [Priestia sp. HNGD-A6]
ATGATTGAAGGAAATCCGTTAGAGCAGAACTCTTCAACGAATCCCTCCTACGATGAAGTAATTACCTTCCCTGCTGATCG
TTACCCTGAAACTGCAGCGCACATTCAACATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGATCGAGACGGTG
CTGAAGAAAACCGCCGTGAGTCTTTAAAAGGCATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTT
TGTGAAGAAGGCGGAAGCGGCGCAGATATTGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATTTCACA
TCAAGTAGATGAGTTTCCAGACGGTACGAAGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(26-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.4

100

0.593