Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   SCI76_RS18065 Genome accession   NZ_CP138621
Coordinates   3536292..3537344 (+) Length   350 a.a.
NCBI ID   WP_028411611.1    Uniprot ID   -
Organism   Priestia sp. HNGD-A6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3531292..3542344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI76_RS18030 - 3531859..3532065 (+) 207 WP_028411617.1 YqgQ family protein -
  SCI76_RS18035 - 3532068..3533036 (+) 969 WP_013059183.1 ROK family glucokinase -
  SCI76_RS18040 - 3533148..3534050 (+) 903 WP_063248513.1 M14 family metallocarboxypeptidase -
  SCI76_RS18045 - 3534086..3534262 (-) 177 WP_028411614.1 DUF2759 domain-containing protein -
  SCI76_RS18050 - 3534472..3535104 (+) 633 WP_063248514.1 MBL fold metallo-hydrolase -
  SCI76_RS18055 - 3535142..3535378 (-) 237 WP_013059179.1 DUF2626 domain-containing protein -
  SCI76_RS18060 - 3535640..3536023 (+) 384 WP_028411612.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  SCI76_RS18065 comGA 3536292..3537344 (+) 1053 WP_028411611.1 competence type IV pilus ATPase ComGA Machinery gene
  SCI76_RS18070 comGB 3537335..3538381 (+) 1047 WP_033579696.1 competence type IV pilus assembly protein ComGB -
  SCI76_RS18075 comGC 3538396..3538707 (+) 312 WP_221832012.1 competence type IV pilus major pilin ComGC -
  SCI76_RS18080 comGD 3538694..3539131 (+) 438 WP_016765559.1 competence type IV pilus minor pilin ComGD -
  SCI76_RS18085 - 3539115..3539453 (+) 339 WP_221832014.1 type II secretion system protein -
  SCI76_RS18090 comGF 3539450..3539887 (+) 438 WP_048019759.1 competence type IV pilus minor pilin ComGF -
  SCI76_RS18095 comGG 3539877..3540251 (+) 375 WP_033579700.1 competence type IV pilus minor pilin ComGG -
  SCI76_RS18100 - 3540295..3540480 (+) 186 WP_013059170.1 YqzE family protein -
  SCI76_RS18105 - 3540504..3541328 (-) 825 WP_221832016.1 YqhG family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39596.97 Da        Isoelectric Point: 9.0586

>NTDB_id=903688 SCI76_RS18065 WP_028411611.1 3536292..3537344(+) (comGA) [Priestia sp. HNGD-A6]
MTEIEQFATYVIRDACECRSSDVHIVPRKKDAVIQLRIDQELILKRVISKEMSERLISHFKFLGGMDIGERRKPQNGALT
TSVDHYQVNLRLSTLPTSHDESLVIRLLPHQQSTSLKHLSLFPEHTKKLISLLKFSHGLIIFTGPTGSGKTTTLYTLLHE
VKHLFNRNVITLEDPIEKPSETVLQVQVNERAGITYTTGLKAILRHDPDIIMVGEIRDSETAKIAVRAALTGHLVLTTMH
TKDTKGSLYRLLEFGVSFQEMEQTLVAVAAQRLVEIRCPLCSGKCHPACKKMRKHRQSSIYELLYGKELSAVMREVKGEN
ADYDYKTLRDVILKGIALGYLYPHSLDGWG

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=903688 SCI76_RS18065 WP_028411611.1 3536292..3537344(+) (comGA) [Priestia sp. HNGD-A6]
TTGACCGAAATTGAACAGTTTGCTACTTACGTTATACGAGATGCATGTGAGTGTCGAAGTTCTGATGTGCATATTGTGCC
CCGAAAGAAAGATGCTGTGATTCAGCTGCGAATTGACCAGGAGCTTATTTTAAAGAGGGTTATTTCAAAGGAAATGTCTG
AACGGCTCATTTCGCATTTTAAATTTTTAGGGGGAATGGATATTGGGGAGCGCAGAAAACCTCAAAATGGTGCATTGACC
ACTTCCGTTGATCACTATCAAGTAAATTTGCGTTTATCAACTCTTCCTACTTCTCATGATGAAAGTCTTGTTATTCGGCT
TTTGCCTCATCAACAATCTACCTCTCTCAAACATTTATCTCTTTTTCCTGAACATACTAAAAAGCTTATTTCTCTCTTGA
AATTCTCTCATGGATTAATTATTTTTACCGGTCCTACAGGATCAGGTAAAACCACTACTCTATATACTCTTTTACACGAA
GTAAAGCACCTTTTTAATCGAAATGTTATTACACTAGAAGATCCTATTGAAAAACCGAGTGAAACCGTGCTTCAAGTGCA
GGTAAATGAACGCGCAGGGATTACGTATACGACTGGTTTAAAAGCTATATTGCGCCATGATCCAGACATTATCATGGTGG
GAGAAATAAGAGATAGTGAGACCGCCAAAATTGCTGTGAGAGCAGCGCTTACCGGACACTTGGTTTTGACAACGATGCAT
ACTAAAGATACAAAAGGATCTTTGTACAGGCTGCTTGAGTTTGGCGTTAGCTTTCAAGAAATGGAGCAGACTCTTGTAGC
AGTAGCTGCACAGCGTCTTGTAGAAATTCGCTGTCCGCTGTGTTCGGGAAAATGCCACCCTGCTTGTAAAAAAATGAGGA
AGCATCGTCAGTCCAGTATATACGAATTGCTTTATGGCAAGGAGCTTAGCGCAGTGATGAGAGAAGTGAAAGGAGAAAAT
GCGGATTATGATTATAAGACGCTCCGAGATGTTATTCTAAAAGGAATCGCGCTAGGCTATTTATATCCGCATTCGCTAGA
CGGATGGGGGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(12-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

58.571

100

0.586