Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LPC23_RS03530 Genome accession   NZ_AP025183
Coordinates   808725..810086 (-) Length   453 a.a.
NCBI ID   WP_229326603.1    Uniprot ID   -
Organism   Flavobacterium ammonificans strain GENT11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 803725..815086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC23_RS03515 (GENT11_06890) ileS 804215..807616 (+) 3402 WP_229331121.1 isoleucine--tRNA ligase -
  LPC23_RS03520 (GENT11_06900) - 807623..808003 (+) 381 WP_229326602.1 TraR/DksA family transcriptional regulator -
  LPC23_RS03525 (GENT11_06910) - 808120..808722 (+) 603 WP_229327124.1 lipoprotein signal peptidase -
  LPC23_RS03530 (GENT11_06920) radA 808725..810086 (-) 1362 WP_229326603.1 DNA repair protein RadA Machinery gene
  LPC23_RS03535 (GENT11_06930) panD 810214..810564 (-) 351 WP_229326604.1 aspartate 1-decarboxylase -
  LPC23_RS03540 (GENT11_06940) panC 810579..811427 (-) 849 WP_229331123.1 pantoate--beta-alanine ligase -
  LPC23_RS03545 (GENT11_06950) - 811535..812347 (+) 813 WP_229331125.1 glycogen/starch synthase -
  LPC23_RS03550 (GENT11_06960) - 812364..813935 (+) 1572 WP_229331127.1 DUF4270 domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49755.15 Da        Isoelectric Point: 6.0986

>NTDB_id=90368 LPC23_RS03530 WP_229326603.1 808725..810086(-) (radA) [Flavobacterium ammonificans strain GENT11]
MSKVKTTFFCQNCGTQYAKWQGQCNACKEWNTIAEEIVQKQEKVAWKSEPTSAGKAPKPLRINEIDSAQEIRLDTTDNEL
NRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLSLPYKTLYVSGEESQKQIKMRAERITPNGDNCYILTETKTQNIFKQI
EAIQPEIVIIDSIQTLHTDYIESTPGSISQIRETTAELIKFAKETNTPVILIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAEIGIYEMLGSGLREVSNPSEILISHKDEELSGTAIATTLEGMRPLMLEIQALVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNITGGISVDDPAIDLAVVAAILSSNEDIPVNKDFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFSTIFVSKYNKIALKNTGIKIRLVAKIEDVAGELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=90368 LPC23_RS03530 WP_229326603.1 808725..810086(-) (radA) [Flavobacterium ammonificans strain GENT11]
ATGTCGAAAGTGAAAACTACTTTTTTCTGTCAAAACTGCGGGACACAATATGCCAAATGGCAAGGGCAATGCAATGCCTG
TAAAGAATGGAATACCATTGCCGAAGAAATTGTCCAAAAACAAGAAAAAGTAGCGTGGAAAAGCGAACCGACAAGCGCTG
GAAAAGCACCAAAACCCTTGCGAATAAATGAAATCGACTCTGCGCAAGAAATTCGTCTAGACACAACAGACAACGAATTG
AATCGCGTTTTAGGAGGCGGAATTGTCCCGGGTTCCTTAATTCTTTTGGGAGGCGAACCAGGTATTGGAAAAAGTACGCT
TTTATTACAAATTTCGCTTAGCTTACCCTATAAAACATTATATGTTTCTGGGGAAGAGAGTCAGAAACAAATCAAAATGC
GTGCAGAACGCATTACCCCAAACGGTGATAATTGCTATATTCTGACCGAAACCAAAACACAGAATATCTTCAAACAAATT
GAAGCCATCCAACCTGAAATCGTCATTATAGATTCGATTCAAACGCTGCATACCGATTATATTGAATCTACACCAGGTAG
TATTTCTCAAATTAGAGAAACAACGGCTGAACTAATTAAATTTGCCAAAGAAACCAATACACCTGTTATTTTAATTGGTC
ACATCACTAAAGACGGAACCATAGCTGGGCCAAAAATTTTGGAACACATGGTCGATACGGTTTTACAATTTGAAGGCGAC
CGAAATCATGTGTACCGTATTTTACGTTCGCTGAAAAATCGTTTTGGCTCCACTGCCGAAATCGGAATATACGAAATGTT
AGGCAGCGGCTTACGCGAAGTATCCAATCCTTCTGAAATTTTGATTTCACACAAAGACGAAGAATTGTCAGGAACTGCTA
TTGCTACTACTTTGGAAGGTATGCGTCCTTTGATGCTCGAAATACAAGCTTTAGTCAGCACGGCAGTATACGGAACACCG
CAACGTAGTACAACTGGATACAATGCCAAAAGACTGAACATGATTTTGGCGGTTTTAGAAAAACGTGCTGGTTTCCGTTT
GGGTGCTAAAGATGTTTTCTTGAATATCACCGGAGGCATTTCCGTAGATGATCCAGCTATTGATTTGGCAGTGGTGGCCG
CTATTTTGTCTTCCAATGAAGACATTCCTGTGAACAAAGATTTTTGTTTTGCAGGCGAAGTAGGCCTTTCAGGCGAAATT
AGACCTGTAAACCGTGTGGATCAACGCATCCAAGAAGCTGAAAAATTAGGTTTTTCAACGATTTTTGTGTCCAAATACAA
CAAAATTGCCTTGAAAAATACAGGGATTAAAATCCGTTTGGTCGCCAAAATTGAAGATGTGGCTGGCGAATTATTTGGAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)

AAA domain (AAA_25)

(66-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

51.522

94.26

0.486
  radA Streptococcus mitis SK321

51.522

94.26

0.486
  radA Streptococcus pneumoniae Rx1

51.522

94.26

0.486
  radA Streptococcus mitis NCTC 12261

51.522

94.26

0.486
  radA Streptococcus pneumoniae R6

51.522

94.26

0.486
  radA Streptococcus pneumoniae TIGR4

51.522

94.26

0.486
  radA Bacillus subtilis subsp. subtilis str. 168

48

99.338

0.477

Multiple sequence alignment