Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABI152_RS08790 Genome accession   NZ_CP157243
Coordinates   1822610..1823086 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain 2024CK-00535     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1817610..1828086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI152_RS08750 (ABI152_08745) tmaR 1818743..1819072 (+) 330 WP_000450409.1 DUF496 family protein -
  ABI152_RS08755 (ABI152_08750) - 1819173..1819538 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  ABI152_RS08760 (ABI152_08755) - 1819809..1820198 (-) 390 WP_001445118.1 IS110 family transposase -
  ABI152_RS08765 (ABI152_08760) - 1820996..1821076 (-) 81 Protein_1713 hypothetical protein -
  ABI152_RS08770 (ABI152_08765) - 1821176..1821325 (-) 150 Protein_1714 DUF5983 family protein -
  ABI152_RS08775 (ABI152_08770) - 1821322..1821699 (-) 378 WP_042048782.1 TA system toxin CbtA family protein -
  ABI152_RS08780 (ABI152_08775) - 1821789..1822157 (-) 369 Protein_1716 type IV toxin-antitoxin system YeeU family antitoxin -
  ABI152_RS08785 (ABI152_08780) yeeT 1822320..1822541 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  ABI152_RS08790 (ABI152_08785) radC 1822610..1823086 (-) 477 WP_001186725.1 RadC family protein Machinery gene
  ABI152_RS08795 (ABI152_08790) - 1823102..1823587 (-) 486 WP_000849582.1 antirestriction protein -
  ABI152_RS08800 (ABI152_08795) - 1823642..1824460 (-) 819 WP_224434089.1 DUF932 domain-containing protein -
  ABI152_RS08805 (ABI152_08800) - 1824669..1825073 (+) 405 WP_000839179.1 transposase -
  ABI152_RS08810 (ABI152_08805) tnpB 1825070..1825417 (+) 348 WP_000612626.1 IS66 family insertion sequence element accessory protein TnpB -
  ABI152_RS08815 (ABI152_08810) - 1825466..1827005 (+) 1540 Protein_1723 IS66-like element ISEc22 family transposase -
  ABI152_RS08820 (ABI152_08815) - 1827113..1827256 (-) 144 Protein_1724 DUF905 family protein -
  ABI152_RS08825 (ABI152_08820) - 1827335..1827790 (-) 456 WP_000581504.1 IrmA family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=903475 ABI152_RS08790 WP_001186725.1 1822610..1823086(-) (radC) [Escherichia coli strain 2024CK-00535]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=903475 ABI152_RS08790 WP_001186725.1 1822610..1823086(-) (radC) [Escherichia coli strain 2024CK-00535]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TTGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399