Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SHN03_RS04920 Genome accession   NZ_CP138566
Coordinates   1023217..1023786 (-) Length   189 a.a.
NCBI ID   WP_000287265.1    Uniprot ID   A0A7U7EXU5
Organism   Staphylococcus aureus strain AUSMDU00020487     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1018217..1028786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHN03_RS04900 - 1019722..1021080 (+) 1359 WP_000021872.1 TrkH family potassium uptake protein -
  SHN03_RS04905 - 1021219..1022730 (+) 1512 WP_000414181.1 bifunctional metallophosphatase/5'-nucleotidase -
  SHN03_RS04920 comK/comK1 1023217..1023786 (-) 570 WP_000287265.1 competence protein ComK Regulator
  SHN03_RS04925 - 1023996..1024214 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  SHN03_RS04930 - 1024295..1025281 (-) 987 WP_000668824.1 lipoate--protein ligase -
  SHN03_RS04935 - 1025480..1025656 (+) 177 WP_000214898.1 YkvS family protein -
  SHN03_RS04940 - 1025671..1026273 (+) 603 WP_001033862.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  SHN03_RS04945 - 1026587..1026649 (+) 63 WP_228764722.1 hypothetical protein -
  SHN03_RS04950 - 1027188..1027289 (+) 102 WP_031785452.1 hypothetical protein -
  SHN03_RS04955 - 1027355..1027519 (+) 165 WP_001812930.1 lactococcin 972 family bacteriocin -
  SHN03_RS04960 - 1027562..1028194 (+) 633 Protein_966 bacteriocin-associated integral membrane family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22601.83 Da        Isoelectric Point: 9.6091

>NTDB_id=903474 SHN03_RS04920 WP_000287265.1 1023217..1023786(-) (comK/comK1) [Staphylococcus aureus strain AUSMDU00020487]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=903474 SHN03_RS04920 WP_000287265.1 1023217..1023786(-) (comK/comK1) [Staphylococcus aureus strain AUSMDU00020487]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

100

100

1
  comK/comK1 Staphylococcus aureus N315

100

100

1