Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ABI159_RS23125 Genome accession   NZ_CP157234
Coordinates   4700716..4701741 (+) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain 2024CK-00474     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4695716..4706741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI159_RS23100 (ABI159_23095) metJ 4696153..4696470 (+) 318 WP_000852812.1 met regulon transcriptional regulator MetJ -
  ABI159_RS23105 (ABI159_23100) yiiX 4696654..4697262 (+) 609 WP_000797341.1 YiiX family permuted papain-like enzyme -
  ABI159_RS23110 (ABI159_23105) - 4697269..4697892 (+) 624 WP_000720774.1 TIGR02117 family protein -
  ABI159_RS23115 (ABI159_23110) rpmE 4697947..4698159 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  ABI159_RS23120 (ABI159_23115) priA 4698362..4700560 (+) 2199 WP_001300388.1 primosomal protein N' Machinery gene
  ABI159_RS23125 (ABI159_23120) cytR 4700716..4701741 (+) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  ABI159_RS23130 (ABI159_23125) ftsN 4701833..4702792 (+) 960 WP_000068828.1 cell division protein FtsN -
  ABI159_RS23135 (ABI159_23130) hslV 4702885..4703415 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  ABI159_RS23140 (ABI159_23135) hslU 4703425..4704756 (+) 1332 WP_001293341.1 HslU--HslV peptidase ATPase subunit -
  ABI159_RS23145 (ABI159_23140) menA 4704823..4705749 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ABI159_RS23150 (ABI159_23145) rraA 4705842..4706327 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  ABI159_RS23155 (ABI159_23150) zapB 4706412..4706657 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=903430 ABI159_RS23125 WP_000644904.1 4700716..4701741(+) (cytR) [Escherichia coli strain 2024CK-00474]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=903430 ABI159_RS23125 WP_000644904.1 4700716..4701741(+) (cytR) [Escherichia coli strain 2024CK-00474]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628