Detailed information NTG0903380

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABI159_RS05215
• Genome accession: NZ_CP157234
• Coordinates: 1080261..1081253 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2024CK-00474
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1075261..1086253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABI159_RS05185 (ABI159_05185)	ispD	1075322..1076032 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABI159_RS05190 (ABI159_05190)	ispF	1076032..1076511 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABI159_RS05195 (ABI159_05195)	truD	1076508..1077557 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABI159_RS05200 (ABI159_05200)	surE	1077538..1078299 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABI159_RS05205 (ABI159_05205)	pcm	1078293..1078919 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABI159_RS05210 (ABI159_05210)	nlpD	1079104..1080198 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABI159_RS05215 (ABI159_05215)	rpoS	1080261..1081253 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABI159_RS05220 (ABI159_05220)	ygbN	1081347..1082711 (-)	1365	WP_000104441.1	GntP family transporter	-
ABI159_RS05225 (ABI159_05225)	ygbM	1082800..1083576 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ABI159_RS05230 (ABI159_05230)	ygbL	1083581..1084219 (-)	639	WP_001278994.1	aldolase	-
ABI159_RS05235 (ABI159_05235)	otnK	1084216..1085478 (-)	1263	WP_072649794.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=903380 ABI159_RS05215 WP_000081550.1 1080261..1081253(+) (rpoS) [Escherichia coli strain 2024CK-00474]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=903380 ABI159_RS05215 WP_000081550.1 1080261..1081253(+) (rpoS) [Escherichia coli strain 2024CK-00474]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715